View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_low_14 (Length: 365)
Name: NF18775_low_14
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 1738952 - 1739286
Alignment:
| Q |
9 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagctgccttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
108 |
Q |
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| T |
1738952 |
gacatgatcacataagtatttgggatgtatttcctcacaacatcataagctaacttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
1739051 |
T |
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| Q |
109 |
tcatcagttctattcctcctaaactttttctattactatatctgtaaacaagttcaattcatgcatgtataaagaaatcagtttcgagtaggtaattcat |
208 |
Q |
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| T |
1739052 |
tcatcagctctattcctcctaaactttttctattattatatctgtaaacaagttcaatt----catgtataaagatatcagtttcgagtaggtaattcat |
1739147 |
T |
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| Q |
209 |
ttggtgaactaagttttcaaacaagagatatgtaaattagtaataaaactactaacttacagatattttcttatgnnnnnnngaaatgagaaatcaatta |
308 |
Q |
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| T |
1739148 |
ttggtgaactaagttttcaaacaagagatatgtaa---agtaataacactactaacttacagatattttcttatgaaaaaaagaaatgagaaatcaatta |
1739244 |
T |
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| Q |
309 |
catgtgtcataaaatgtttttattttcttgagaaatcaatat |
350 |
Q |
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| T |
1739245 |
catgtgtcataaaatgtttttattttcttgagaaatcaatat |
1739286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 1717455 - 1717667
Alignment:
| Q |
9 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagctgccttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
108 |
Q |
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| T |
1717455 |
gacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaagctatctagattgacacctagtggctcat |
1717554 |
T |
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| Q |
109 |
tcatcagttctattcctcctaaactttttctattactatatctgtaaacaagttcaattcatgcatgtataaagaaatcagtttcgagtaggtaattcat |
208 |
Q |
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| T |
1717555 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaatt----catgtataaagaaatcagtttcgagtaggtaattcat |
1717650 |
T |
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| Q |
209 |
ttggtgaactaagtttt |
225 |
Q |
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| T |
1717651 |
ttggttaacaaagtttt |
1717667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 1754123 - 1754283
Alignment:
| Q |
9 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagctgccttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
108 |
Q |
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||||| |||||||||| |||||| ||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||| |
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| T |
1754123 |
gacattatcacataagcatttggattgtatttcctcactgcatcataagcctccttgtaatatttcttgaggctatctagattgacaccttgtggctcat |
1754222 |
T |
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| Q |
109 |
tcatcagttctattcctcctaaactttttctattactatatctgtaaacaagttcaattca |
169 |
Q |
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|||||| |||||||||||||||||| |||||||| ||| |||| |||| ||||||||| |
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| T |
1754223 |
tcatcaactctattcctcctaaacttggtctattaccatacctgtccacaaattcaattca |
1754283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 1748807 - 1748967
Alignment:
| Q |
9 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagctgccttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
108 |
Q |
| |
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||||| |||||||||| | |||| ||||||| |||||| |||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||| |
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| T |
1748807 |
gacatgatcacataagcctctgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcat |
1748906 |
T |
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| Q |
109 |
tcatcagttctattcctcctaaactttttctattactatatctgtaaacaagttcaattca |
169 |
Q |
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||||||| |||||||||||||||||| | |||||| ||| |||| |||| ||||||||| |
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| T |
1748907 |
tcatcagctctattcctcctaaacttggtttattaccatacctgtccacaaattcaattca |
1748967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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