View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_low_18 (Length: 313)
Name: NF18775_low_18
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 33992834 - 33992533
Alignment:
| Q |
1 |
ctggtgtcggagagggcaacaacccctacccttgtggccaatactttgaccctcttggtctagccgacgatccagttactttcgccgagcttaaagtgaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992834 |
ctggtgtcggagagggcaacaacctctaccctggtggccaatactttgaccctcttggtctagccgacgatccagttactttcgccgagcttaaagtgaa |
33992735 |
T |
|
| Q |
101 |
ggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaatcttttggatcac |
200 |
Q |
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| T |
33992734 |
ggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaatcttttggatcac |
33992635 |
T |
|
| Q |
201 |
attgataaccctgttgccaataatgcttgggtttatgccaccaagtttgtgcccggttcttaaacatcaatgttatctatgattgcctttgtgtggatga |
300 |
Q |
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| T |
33992634 |
attgataaccctgttgccaataatgcttgggtttatgccaccaagtttgtgcccggttcttaaacatcaatgttatctatgattgcctttgtgtggatga |
33992535 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
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|| |
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| T |
33992534 |
tg |
33992533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 3572981 - 3573076
Alignment:
| Q |
96 |
gtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaatctt |
191 |
Q |
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| T |
3572981 |
gtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatctt |
3573076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 42603046 - 42603171
Alignment:
| Q |
44 |
ctttgaccctcttggtctagccgacgatccagttactttcgccgagcttaaagtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggt |
143 |
Q |
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|||||||||||||||||| || || || || | | | ||||| ||| | || || |||||| |||| || || ||||||||||||| || ||||||||| |
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| T |
42603046 |
ctttgaccctcttggtcttgctgatgaccccgatgcattcgcagagttgaaggtcaaggaactcaagaacggccgattggctatgttctccatgtttggt |
42603145 |
T |
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| Q |
144 |
ttctttgttcaagctattgttactgg |
169 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
42603146 |
ttctttgttcaagccattgttactgg |
42603171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 38357304 - 38357392
Alignment:
| Q |
99 |
aaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaa |
187 |
Q |
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|||||| |||| || || ||||| || ||||| || ||||| || ||||||||||| |||||||| || || || |||||||||||||| |
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| T |
38357304 |
aaggaactcaagaacggtagattagccatgttctctatgttcggattctttgttcaggctattgtgaccggaaagggacctttggagaa |
38357392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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