View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_low_21 (Length: 278)
Name: NF18775_low_21
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 45096598 - 45096853
Alignment:
| Q |
20 |
tagtggaatacaatcaattgtgcgttttgacaaattgaggttcgtactagcatttatt-------ttannnnnnnnagtggataaagtttctctcttgag |
112 |
Q |
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| T |
45096598 |
tagtggaatacaatcaattgtgcgttttgacaaattgaggttcgtactagcattttttatttttatttttatttttagtggataaagtttctctcttgag |
45096697 |
T |
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| Q |
113 |
tttgattctcgttggtttttggtcccctaatacaaaatactcgtgcatgattcataaagggagcatgctcaacgattaaaccctcgcatttttggtaaat |
212 |
Q |
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| T |
45096698 |
tttaattttcgttggtttttggtcccctaatacaaaatactcgtgcatgattcataaagggagcatgctcaacgattaaactctcgcatttttggtaaat |
45096797 |
T |
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| Q |
213 |
ttcaactcccttcaccaaatagagttttaatcagtttataccatccttatcctttg |
268 |
Q |
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| T |
45096798 |
ttcaactcccttcaccaaatagagttttaatcagttgataccatccttatcctttg |
45096853 |
T |
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Back To:
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Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 89 - 260
Target Start/End: Original strand, 25557 - 25729
Alignment:
| Q |
89 |
agtggataaagtttctctcttgagtttgattctcgttggtttttggtcccctaatacaaaatactcgtgcatgattcataaagggagcatgctcaacgat |
188 |
Q |
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|||||||||||||||||||||| |||||| || | | ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
25557 |
agtggataaagtttctctcttgtgtttgagacttgctcgtttttggtcccctaatacaaaatactggtgcatgattcataaagggagcattctcaacgat |
25656 |
T |
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| Q |
189 |
taaaccctcgcattt-ttggtaaatttcaactcccttcaccaaatagagttttaatcagtttataccatcctt |
260 |
Q |
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| T |
25657 |
taaaccatcatatttgctgtaaaatttcagcatcgttcaacaaatagagctttaatcagctgataccatcctt |
25729 |
T |
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