View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_low_22 (Length: 272)
Name: NF18775_low_22
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_22 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 2811 - 2764
Alignment:
| Q |
19 |
ctagagagaaataaactctcacatgataacaacccagagagaaataaa |
66 |
Q |
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| T |
2811 |
ctagagagaaataaactctcacatgataacaatccagagagaaataaa |
2764 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 19705939 - 19705890
Alignment:
| Q |
21 |
agagagaaataaactctcacatgataacaacccagagagaaataaactccca |
72 |
Q |
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||||||||||||||||||||| | | |||||||| |||||||||||||||| |
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| T |
19705939 |
agagagaaataaactctcaca--acagcaacccagggagaaataaactccca |
19705890 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 19005019 - 19004970
Alignment:
| Q |
21 |
agagagaaataaactctcacatgataacaacccagagagaaataaactccca |
72 |
Q |
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||||||||||||||||||||| ||| ||| |||| |||||||||||||||| |
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| T |
19005019 |
agagagaaataaactctcaca--atatcaatccagggagaaataaactccca |
19004970 |
T |
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