View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_low_25 (Length: 251)
Name: NF18775_low_25
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 36291333 - 36291118
Alignment:
| Q |
37 |
ttagcgaggaacctttcaatt-ctcaaacattgaagacccttctagtaagtaactgccaaattgtaactccaattcccctgtaaacctcaactaaactcc |
135 |
Q |
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| T |
36291333 |
ttagcgaggaacctttcaattgctcaaacattgaagaccctcctagtaagtaactgccaaattgtaactccaattcccctgtaaacctcaactaaactcc |
36291234 |
T |
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| Q |
136 |
attagctacaagataccaatcgaccctctttcccttcatttcattttccccttaattaggcactctataaatatgcatttcagctaaacctctattcatt |
235 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36291233 |
attaactacaagataccaatcgaccctctttcccttcatttcattttccccttaattaggcactctataaatatgcatttcagctaaacctctattcatt |
36291134 |
T |
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| Q |
236 |
cattcatcttataaac |
251 |
Q |
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|||||||||||||||| |
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| T |
36291133 |
cattcatcttataaac |
36291118 |
T |
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