View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_low_27 (Length: 250)
Name: NF18775_low_27
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_27 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 16772096 - 16771863
Alignment:
| Q |
17 |
tgttacatacaacattatcggtcttacatgtgtctgacaaaatttctctttcaacttggatggtactttcgtattatataaaacatttgagtctcttctc |
116 |
Q |
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| T |
16772096 |
tgttacatacaacattattggtcttacatgtgtctgacaaaatttctctttcaacttggatggtactttcgtattatataaaacatttgaatctcttctc |
16771997 |
T |
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| Q |
117 |
catttcaaccgctcatattgaatttaatggtttgcatttgtttctatttcttcgttaatttatattaaggacccgtgatatttaaaatgtgtaacttgca |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |
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| T |
16771996 |
catttcaaccggtcatattgaatttaatggtttgcatatgtttctatttcttcgtcaacttatactaaggacccgtgatatttaaaatgtgtaacttgcg |
16771897 |
T |
|
| Q |
217 |
atttaaaaatatatttgctagaattgtgatttaa |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
16771896 |
atttaaaaatatatttgctagaattgtgatttaa |
16771863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 36 - 250
Target Start/End: Complemental strand, 16779536 - 16779322
Alignment:
| Q |
36 |
ggtcttacatgtgtctgacaaaatttctctttcaacttggatggtactttcgtattatataaaacatttgagtctcttctccatttcaaccgctcatatt |
135 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||| ||| |
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| T |
16779536 |
ggtcttacaaatgtctgacaaaatttctctttcaacttgaatggtactttcgtatcacataaaacatctgagtctcttctccatttcaaccactcaaatt |
16779437 |
T |
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| Q |
136 |
gaatttaatggtttgcatttgtttctatttcttcgttaatttatattaaggacccgtgatatttaaaatgtgtaacttgcaatttaaaaatatatttgct |
235 |
Q |
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| T |
16779436 |
gaatttgatggtttacatatatttctattttctcatcggtttatactagggacccataatatttaaaatatgtaacttgccgtttaaaaatatatttgct |
16779337 |
T |
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| Q |
236 |
agaattgtgatttaa |
250 |
Q |
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||||||||||||||| |
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| T |
16779336 |
agaattgtgatttaa |
16779322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 37616710 - 37616592
Alignment:
| Q |
96 |
aaaacatttgagtctcttctccatttcaaccgctcatattgaatttaatggtttgcatttgtttctatttcttcgttaatttatattaaggacccgtgat |
195 |
Q |
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|||||| ||||| |||||||||||||||||| | || |||||| ||||| || ||| || |||||||||| ||| | ||| || |||||||| ||| |
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| T |
37616710 |
aaaacacttgaggctcttctccatttcaaccacccagcttgaatacaatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagat |
37616611 |
T |
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| Q |
196 |
atttaaaatgtgtaacttg |
214 |
Q |
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||||||| |||||||||| |
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| T |
37616610 |
atttaaatcgtgtaacttg |
37616592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 38606786 - 38606681
Alignment:
| Q |
109 |
ctcttctccatttcaaccgctcatattgaatttaatggtttgcatttgtttctatttcttcgttaatttatattaaggacccgtgatatttaaaatgtgt |
208 |
Q |
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|||||||||||||||||| | || |||||| ||||||| ||| || |||||||||||||| | ||| || || |||||| |||||||||| |||| |
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| T |
38606786 |
ctcttctccatttcaaccacccagcttgaatacgatggtttacatctgcttctatttcttcgtcattttgtactatggacccaagatatttaaaccgtgt |
38606687 |
T |
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| Q |
209 |
aacttg |
214 |
Q |
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|||||| |
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| T |
38606686 |
aacttg |
38606681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 33227035 - 33226885
Alignment:
| Q |
64 |
ctttcaacttggatggtactttcgtattatataaaacatttgagtctcttctccatttcaaccgctcatattgaatttaatggtttgcatttgtttctat |
163 |
Q |
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|||||||||| |||||||||| ||| || |||||| |||| |||||||||||||||||| | || |||||| | |||| || ||| || |||||| |
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| T |
33227035 |
ctttcaacttaagtggtactttcttatcgtacaaaacacctgagactcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctat |
33226936 |
T |
|
| Q |
164 |
ttcttcgttaatttatattaaggacccgtgatatttaaaatgtgtaacttg |
214 |
Q |
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|||| ||| | ||| || |||||||| |||||||||| |||||||||| |
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| T |
33226935 |
ttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttg |
33226885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 1211846 - 1211907
Alignment:
| Q |
64 |
ctttcaacttggatggtactttcgtattatataaaacatttgagtctcttctccatttcaac |
125 |
Q |
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|||||||||| ||||| |||| ||| ||| |||||||||||| ||||||||||||||||| |
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| T |
1211846 |
ctttcaacttaagtggtattttcttatcatacaaaacatttgaggctcttctccatttcaac |
1211907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 3273265 - 3273144
Alignment:
| Q |
47 |
tgtctgacaaaatttctctttcaacttggatggtactttcgtattatataaaacatttgagtctcttctccatttcaaccgctcatattgaatttaatgg |
146 |
Q |
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||||||| |||||||| | |||||| | ||| ||||||||||| | |||||||| |||| ||| |||||||||||||| || ||||||| |||| |
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| T |
3273265 |
tgtctgataaaatttccccttcaacatcaatgatactttcgtatcacataaaacaaatgaggctcatctccatttcaaccatccaacttgaattcgatgg |
3273166 |
T |
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| Q |
147 |
tttgcatttgtttctatttctt |
168 |
Q |
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||| ||||| ||||||||||| |
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| T |
3273165 |
tttatatttgcttctatttctt |
3273144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 2610354 - 2610204
Alignment:
| Q |
64 |
ctttcaacttggatggtactttcgtattatataaaacatttgagtctcttctccatttcaaccgctcatattgaatttaatggtttgcatttgtttctat |
163 |
Q |
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|||||||||| |||||||||| ||| |||||||| |||| |||||||||||||||||| | || |||||| | ||||||| ||| || |||||| |
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| T |
2610354 |
ctttcaacttaagtggtactttcttatcgcataaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggtttacatctgcttctat |
2610255 |
T |
|
| Q |
164 |
ttcttcgttaatttatattaaggacccgtgatatttaaaatgtgtaacttg |
214 |
Q |
| |
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|||| || | ||| || |||||||| |||||||||| |||||||||| |
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| T |
2610254 |
ttctctgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttg |
2610204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 4807418 - 4807268
Alignment:
| Q |
64 |
ctttcaacttggatggtactttcgtattatataaaacatttgagtctcttctccatttcaaccgctcatattgaatttaatggtttgcatttgtttctat |
163 |
Q |
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|||||||||| ||||||||||| ||| | |||||| |||| |||||||||||||||||| | ||| |||||| |||| || ||| || |||||| |
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| T |
4807418 |
ctttcaacttaaatggtactttcttatcgcacaaaacacctgagactcttctccatttcaaccacccatcttgaatacgatggcttacatctgcttctat |
4807319 |
T |
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| Q |
164 |
ttcttcgttaatttatattaaggacccgtgatatttaaaatgtgtaacttg |
214 |
Q |
| |
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|||| ||| | ||| || || ||||| |||||||||| ||||||||||| |
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| T |
4807318 |
ttctccgtcattttgtacgaaagacccaagatatttaaactgtgtaacttg |
4807268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 38453116 - 38453226
Alignment:
| Q |
104 |
tgagtctcttctccatttcaaccgctcatattgaatttaatggtttgcatttgtttctatttcttcgttaatttatattaaggacccgtgatatttaaaa |
203 |
Q |
| |
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|||| |||||||||||||||||| | || |||||| | |||| || ||| || |||||||||| ||| | ||| ||| |||||||| |||||||||| |
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| T |
38453116 |
tgaggctcttctccatttcaaccacccagcttgaatatgatggcttacatatgcttctatttctccgtcattttgtatgaaggacccaagatatttaaat |
38453215 |
T |
|
| Q |
204 |
tgtgtaacttg |
214 |
Q |
| |
|
|||||||||| |
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| T |
38453216 |
cgtgtaacttg |
38453226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 51441252 - 51441370
Alignment:
| Q |
96 |
aaaacatttgagtctcttctccatttcaaccgctcatattgaatttaatggtttgcatttgtttctatttcttcgttaatttatattaaggacccgtgat |
195 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| | || |||||| | |||| || || || |||||||||| ||| | ||| ||| || ||||| ||| |
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| T |
51441252 |
aaaacacttgaggctcttctccatttcaaccacccagcttgaatatgatggcttagatctgcttctatttctccgtcattttgtatgaaagacccaagat |
51441351 |
T |
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| Q |
196 |
atttaaaatgtgtaacttg |
214 |
Q |
| |
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||||||| ||||||||||| |
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| T |
51441352 |
atttaaactgtgtaacttg |
51441370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 12807542 - 12807602
Alignment:
| Q |
64 |
ctttcaacttggatggtactttcgtattatataaaacatttgagtctcttctccatttcaa |
124 |
Q |
| |
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||||||||||| |||||||||| ||| | |||| ||||| ||| |||||||||||||||| |
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| T |
12807542 |
ctttcaacttgagtggtactttcatatcacataagacattagaggctcttctccatttcaa |
12807602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 10824517 - 10824606
Alignment:
| Q |
37 |
gtcttacatgtgtctgacaaaatttctctttcaacttggatggtactttcgtattatataaaacatttgagtctcttctccatttcaacc |
126 |
Q |
| |
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|||||||| ||||||| ||||||| | |||||||| ||||| |||||||| | |||||||| |||| |||||||||||||||||| |
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| T |
10824517 |
gtcttacaactgtctgatgaaatttcccattcaacttaactggtattttcgtatcacataaaacacctgagactcttctccatttcaacc |
10824606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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