View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_low_3 (Length: 603)
Name: NF18775_low_3
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 17 - 586
Target Start/End: Original strand, 9453735 - 9454304
Alignment:
| Q |
17 |
aatagcggcgttatagcaatgttgtgtggcataatttgatcaaaccactatattttccacaattgacaacaccggtgatggcaaccattagtattacctg |
116 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9453735 |
aatagcggcgttatagcaatgttgcgtggcacaatttgatcaaaccactatatttttcacaattgacaacaccggtgatggcaaccattagtattacctg |
9453834 |
T |
|
| Q |
117 |
cctgtaaagccatctaggtgactcagggagggacaacatcaaaacaaactgcactatagcggggattgctgccactccaagcatccaacgccatgttcct |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9453835 |
cctgtagagccatctaggtgactcagggagggacaacatcaatacgaactgcactatagcggggattgctgccactccaagcatccaacgccatgttcct |
9453934 |
T |
|
| Q |
217 |
ggagcctaaaagaaatcaaattgattgcatnnnnnnntatcattcaagtgttatgttatgaacttcaataactacacatctttcaatcaagcatagaaca |
316 |
Q |
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| T |
9453935 |
ggagcctaaaagaaatcaaattgatgacataaaaaaatatcattcaagtgttatgttatgaacttcaataactacaggtctttcaatccagcatagaaca |
9454034 |
T |
|
| Q |
317 |
taccttggtaaatgccaaattgatgaggtaagagagaaattgacctcctgttataagtaaaccattggtgcaaaccaatgctcctctaatcttagcaggg |
416 |
Q |
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| T |
9454035 |
taccttggtaaatgccaaattgatgaggtaagagagaaattgacctcctgttataagtaaaccattggtgcaaaccaatgctcctctaatcttagcaggg |
9454134 |
T |
|
| Q |
417 |
gaagcttctgagatgtatagaggagcagtcatggatgcaacaccaactcctaagccaactaaaactcttccgataatgataacccaaggagctggagcag |
516 |
Q |
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| T |
9454135 |
gaagcttctgagatgtatagaggagcagtcatggatgcaacaccaactcctaagccaactaaaactcttccgataatgataacccaaggagctggagcag |
9454234 |
T |
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| Q |
517 |
cagccataactaatgcacctgcaacgaacaccacatcagccattaaaatagttttcttccttcccatctt |
586 |
Q |
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| T |
9454235 |
cagccataactaatgcacctgcaacgaacaccacatctgccattaaaatagttttcttccttcccatctt |
9454304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 109 - 586
Target Start/End: Original strand, 9442551 - 9443042
Alignment:
| Q |
109 |
attacctgcctgtaaagccatctaggtgactcagggagggacaacatcaaaacaaactgcactatagcggggattgctgccactccaagcatccaacgcc |
208 |
Q |
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| T |
9442551 |
attacctgccggtagagccatctaggtgactcagggagggacaacattaatacaaactgtatgatagcgggaatcgctgccaccccaagcatccaacgcc |
9442650 |
T |
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| Q |
209 |
atgttcctggagcctaaaagaaatcaaattgattgcatnnnnnnnta----tcattcaagtgttatgttatgaa----cttcaataactacacatctttc |
300 |
Q |
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|||| || ||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
9442651 |
atgtcccgggagcctaaaacaaatcaaattgatgacataaaaacaaaaatctcattcaagtgttatgttatgaatgaacttcaataactacattgcttca |
9442750 |
T |
|
| Q |
301 |
aat--caagcatagaacataccttggtaaatgccaaattgatgaggtaagagagaaattgacctcctgttataagtaaaccattggtgcaa-------ac |
391 |
Q |
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||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| || |
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| T |
9442751 |
aatttcaatca---aacataccttggtaaatgccaaattgatgaggtaagagagaaattgaccacctgttatgagtaaaccattggtgcaaacggcaaac |
9442847 |
T |
|
| Q |
392 |
caatgctcctctaatcttagcaggggaagcttctgagatgtatagaggagcagtcatggatgcaacaccaactcctaagccaactaaaactcttccgata |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||| || | |||||||||| |
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| T |
9442848 |
caatgctcctctaatcttagcaggggaagcttctgagatgtatagaggagcagtcatggatgcagcaccgactcccaaaccaaccaagagtcttccgata |
9442947 |
T |
|
| Q |
492 |
atgataacccaaggagctggagcagcagccataactaatgcacctgcaacgaacaccacatcagccattaaaatagttttcttccttcccatctt |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9442948 |
atgataacccaaggagctggagcagcagccataactaatgcacctgcaacgaacaccacatcagccattaaaatagttttcttccttcccatctt |
9443042 |
T |
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