View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_low_4 (Length: 578)
Name: NF18775_low_4
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 34648822 - 34648258
Alignment:
| Q |
1 |
atggtagaaaaagaagtggagacagacagcaagaaaatgaaccaccctcgtcgaggaggaatccgaacattacctttcattcttggtaagcttaatttta |
100 |
Q |
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| T |
34648822 |
atggtagaaaaagaagtggagacagacagcaagaaaatgaaccaccctcgtcgaggaggaatccgaacattacctttcattcttggtaagcttaatttta |
34648723 |
T |
|
| Q |
101 |
ccttaatctctttatgttgaactaatttcttcatattcatttcccatgtcaatatttattttctattacttttccttcccgttctcattcnnnnnnnnn- |
199 |
Q |
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| T |
34648722 |
ccttaatctctttatgttgaactaatttcttcatattcatttcccatgtcaatatttattttctattacttttccttcccgttctcattcattttttttt |
34648623 |
T |
|
| Q |
200 |
---gttcatagctttaaaatatgagttcagacgatcagtgtccttgtgaacnnnnnnnattaaaactaaaaggaagtatttaattacttacttgaaatnn |
296 |
Q |
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| T |
34648622 |
tttgttcatagctttaaaatatgagttcagacgatcagtgtccttgtgaactttttttattaaaaataaaaggaagtatttaattacttacttgaaataa |
34648523 |
T |
|
| Q |
297 |
nnnnnt--atatttaatgtactaatacctaagatcaatgaaaattgtacatttaaattgttaaaatcaatggggttttaacttgcatatcatggagtcat |
394 |
Q |
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| T |
34648522 |
aaaaaataaaatttaatgtactaatacctaagatcaatgaaaattgtacatttaaattgttaaaatcaatggggttttaacttgcatgtcatggagtcat |
34648423 |
T |
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| Q |
395 |
tccaagactaattctaatacatttatttgcatggaaaataactatagatagaatatactcttttttatgcaaaattacaacattgtagaatgtatatttt |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34648422 |
tccaagactaattctaatacatttatttgcatggaaaataactatagatagaatatactcttttttatgcaaaattacaacattgtagaatgtatatttt |
34648323 |
T |
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| Q |
495 |
ttgaagtatcaatatagaataggctgcctatagaatatatacaacttttgatggtcgtgatttat |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34648322 |
ttgaagtatcaatatagaataggctgcctatagaatatatacaatttttgatggtcgtgatttat |
34648258 |
T |
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