View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18775_low_5 (Length: 573)
Name: NF18775_low_5
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 9 - 554
Target Start/End: Complemental strand, 12532325 - 12531781
Alignment:
| Q |
9 |
gaagaaaatacacaaaaacaaacaatgaagcaaagttttggacacaatttaattcataaagcagaggacagcatacaccacacaaattaggcacatcctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12532325 |
gaagaaaatacacaaaaacaaacaatgaagcaaagttttggagacaatttaattcataaagcagaggacagcatacaccacacaaattaggcacatcctt |
12532226 |
T |
|
| Q |
109 |
gatggacaaggccaaactatttt--cccatctatgaagcaacgacacacacaaaactaacacataaacccccataataattaaacgatagaagtgtttta |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12532225 |
gatggacaaggccaaactattttttcccatctacgaagcaacgacacacacaaaactaacacataaacccccataataattaaacgatagaagtgtttta |
12532126 |
T |
|
| Q |
207 |
atgtatgtagcaacacatgttaatctcatacaagtgcagacatgagttatcaccaagatatgtcaggcataccttcaatttgaataatcaaagcgtccca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
12532125 |
atgtatgtagcaacacatgttaatctcatacaagtgcagacatgagttatcaccaagatatgtcaagcataccttcaatttgaataatcaaagcatccct |
12532026 |
T |
|
| Q |
307 |
attagtattacatcaatttcaattattttcatgaagatgagcatcaaagggaatatgaaaaac-ttcacaaaatttgtaaactacttttcataatcacnn |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||| |
|
|
| T |
12532025 |
attagtattacatcaatttcaattattttcatgaagatgagcatcaaagggaatatgaaaaactttaacaaaatttgtaaaccacttttcttaatc---- |
12531930 |
T |
|
| Q |
406 |
nnnnnnagatttatttcataatcatgttcatttaatctataactgactgttatttagaaatactgaatcttgaaaagtgttatccattcatcttatatgc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531929 |
gtttttagatttatttcataatcatgttcatttaatctataactgactgttatttagaaatactgaatcttgaaaagtgttatccattcatcttatatgc |
12531830 |
T |
|
| Q |
506 |
caaatcaaggcaatgcataactataatagtactacgaaattgtagatcc |
554 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12531829 |
caaatcaaggcaatgcataactacaatagtactacgaaattgtagatcc |
12531781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University