View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_low_8 (Length: 420)
Name: NF18775_low_8
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 14241879 - 14241570
Alignment:
| Q |
16 |
atcgtcattattattatgctaattatgaaaagaattaacatgttccagnnnnnnnttcaatgttgttgtattacagaatgatgcacctactgggatagcc |
115 |
Q |
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| T |
14241879 |
atcgtcattattattatgctaattatgaaaagaattaacattttccagaaaaaa-ttcaatgtttttgtattacagaatgatgcacctactgggatagcc |
14241781 |
T |
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| Q |
116 |
tatacttcacaaaatcaatctgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagac |
215 |
Q |
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| T |
14241780 |
tatacttcacaaaatcaatatgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagac |
14241681 |
T |
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| Q |
216 |
attactacgagtct---tgttacattcaaggttccattgatttcatatttggtcgtggcagaaccatcttccaagtgagttcattttcttatctattttc |
312 |
Q |
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| T |
14241680 |
attactacgagtcttgttgttacattcaaggttccattgatttcatatttggtcgtggcagaaccatcttccaagtgagttcattttcttatctattttc |
14241581 |
T |
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| Q |
313 |
tacatccttac |
323 |
Q |
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| T |
14241580 |
tacatccttac |
14241570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 73 - 293
Target Start/End: Original strand, 12957147 - 12957379
Alignment:
| Q |
73 |
caatgttgttgtattacagaatgatgcacctactgggatagcctatacttcacaaaatcaatctgtg------------gcagcagaaaaagcagcattt |
160 |
Q |
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| T |
12957147 |
caatgttgttgcattatagaatgatgcacctacaggagttgcctatacttcacaaaatcaatctgtggcagcatttgtggcagcagagaaagctgcattt |
12957246 |
T |
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| Q |
161 |
tatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagacattactacgagtcttgttacattcaaggttccattgatttcatat |
260 |
Q |
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| T |
12957247 |
tatcattgtgcattttacagtacacacaacacactctttgattacaaaggtagacattactatgagtcttgttacattcaaggctccattgatttcatat |
12957346 |
T |
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| Q |
261 |
ttggtcgtggcagaaccatcttccaagtgagtt |
293 |
Q |
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| T |
12957347 |
ttggtcgtggcagaaccatcttccaagtgagtt |
12957379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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