View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18775_low_9 (Length: 419)

Name: NF18775_low_9
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18775_low_9
NF18775_low_9
[»] chr4 (10 HSPs)
chr4 (6-403)||(6948103-6948500)
chr4 (40-160)||(11160646-11160766)
chr4 (37-151)||(11931944-11932058)
chr4 (93-160)||(11166276-11166343)
chr4 (94-158)||(11179291-11179355)
chr4 (112-158)||(11174669-11174715)
chr4 (112-158)||(11182131-11182177)
chr4 (94-195)||(11189953-11190054)
chr4 (233-298)||(11190104-11190169)
chr4 (99-157)||(52791991-52792049)
[»] chr7 (2 HSPs)
chr7 (7-307)||(662114-662414)
chr7 (39-149)||(6778514-6778624)
[»] chr8 (4 HSPs)
chr8 (91-151)||(24817214-24817274)
chr8 (228-282)||(24817071-24817125)
chr8 (108-157)||(24406504-24406553)
chr8 (108-157)||(24412655-24412704)
[»] chr5 (4 HSPs)
chr5 (106-151)||(8981943-8981988)
chr5 (106-157)||(8991442-8991493)
chr5 (70-151)||(35390508-35390589)
chr5 (233-282)||(36687067-36687116)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 6 - 403
Target Start/End: Original strand, 6948103 - 6948500
Alignment:
Q  6 agcagcacagatgagattgaagatcgtaacattatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactg 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6948103 agcagcccagatgagattgaagatcgtaacattatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcagaactg 6948202  T
Q  106 gcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttggcagcatcatccg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6948203 gcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttggcagcaccatccg 6948302  T
Q  206 tcaaattcttgattgattggaacacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatcgatgatgatgatgccat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6948303 tcaaattcttgattgattggaacacaacctcttcgatttcaaatgtctcaccgtcggaactcttcatggtgaacttctttgtcgatgatgatgatgccat 6948402  T
Q  306 gagtgaagtgaatgaggaacagaataggcgtgagtactatttataatgttgtgcccaagcaactagggtctcctacttcatcaaaaatatatcctttt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948403 gagtgaagtgaatgaggaacagaataggcgtgagtactatttataatgttgtgcccaagcaactagggtctcctacttcatcaaaaatatatcctttt 6948500  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 11160766 - 11160646
Alignment:
Q  40 tcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataa 139  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||| || |||||||||| ||||||| ||| ||||||||||||||||||| ||||||||    
T  11160766 tcaaccttgacgaattcagtgtcccatttgttaatttcatcttcagagggcttttcatcagaactggtagcgtcaacatgcttcttgcaatgctcaataa 11160667  T
Q  140 ccttagccaagaacttgccgg 160  Q
    || ||||||||| ||||||||    
T  11160666 ccatagccaagatcttgccgg 11160646  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 11931944 - 11932058
Alignment:
Q  37 ttatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaa 136  Q
    ||||||||||| ||||||||||  |||||||| || | |||||| ||  || ||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  11931944 ttatcaaccttgacgaattcagcatcccatttcttcaattcatcctcggagggctttccatcggaactctcagcctcaacatgcttcttgcaatactcaa 11932043  T
Q  137 taaccttagccaaga 151  Q
    ||||||| |||||||    
T  11932044 taaccttcgccaaga 11932058  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 11166276 - 11166343
Alignment:
Q  93 ttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgg 160  Q
    |||||| ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  11166276 ttcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgccgg 11166343  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 11179291 - 11179355
Alignment:
Q  94 tcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 158  Q
    ||||| ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  11179291 tcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgcc 11179355  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 11174715 - 11174669
Alignment:
Q  112 tcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 158  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  11174715 tcaacatgtttcttgcaatactcgataaccttagccaagatcttgcc 11174669  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 11182177 - 11182131
Alignment:
Q  112 tcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 158  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  11182177 tcaacatgtttcttgcaatactcgataaccttagccaagatcttgcc 11182131  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 11189953 - 11190054
Alignment:
Q  94 tcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttgg 193  Q
    ||||| |||||  |||| |||||||| ||||||||||||||||||||| | ||||||| |||||| | || || || ||   ||||||||||||| ||||    
T  11189953 tcatcagaacttacagcatcaacatgtttcttgcaatactcaataaccatggccaagatcttgcctgttacgttcgaaatagggatttcagtgtcattgg 11190052  T
Q  194 ca 195  Q
    ||    
T  11190053 ca 11190054  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 11190104 - 11190169
Alignment:
Q  233 cctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatcgatgatgatg 298  Q
    |||||||||||||||||||||| || || |||||||||| | ||| |||||| || ||||||||||    
T  11190104 cctcttcgatttcaaaggtctcgccttcagaactcttcaggatgatcttcttcattgatgatgatg 11190169  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 52791991 - 52792049
Alignment:
Q  99 ggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 157  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||||| | ||||| |||||    
T  52791991 ggaactggtagcttcaacgtgcttcttacaatactcaataaccttcgtcaagatcttgc 52792049  T

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Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 662114 - 662414
Alignment:
Q  7 gcagcacagatgagattgaagatcgtaacattatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactgg 106  Q
    ||||| || ||||||||||||| |||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||    
T  662114 gcagcccatatgagattgaagagcgtaacattatcaacctcgacgaattcagtgtaccatttgttaagtttatcatcaaagagcttttcataagaactgg 662213  T
Q  107 cagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttggcagcatcatccgt 206  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | |||||| | |||| ||||||||||||||||| |||||| |||| ||||||| ||    
T  662214 cagcctcaacatgtttcttgcaatactcaataaccttagccaatatcttgcccgttatgcgcggaaccaggatttcaatgtcgtcggcaacatcatcggt 662313  T
Q  207 caaattcttgattgattggaacacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatcgatgatgatgatgccatg 306  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||| ||||| ||||||  | ||||||||||||||||||    
T  662314 caaattcttgattgattggaacaccacctcttcgatttcaaaggtcacgctgtcggaactcttcaaggtgatcttcttcgtggatgatgatgatgccatg 662413  T
Q  307 a 307  Q
    |    
T  662414 a 662414  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 6778624 - 6778514
Alignment:
Q  39 atcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaata 138  Q
    ||||||||| ||||||||||  ||||| || ||||| ||||| ||  |  | |||||||||||||| || || |||||||||||||| || || |||||     
T  6778624 atcaaccttcacgaattcagcatcccaattcttaagatcatcttctgaaggtttttcatcggaactcgcggcatcaacatgcttcttacagtattcaatc 6778525  T
Q  139 accttagccaa 149  Q
    ||||| |||||    
T  6778524 accttcgccaa 6778514  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 24817274 - 24817214
Alignment:
Q  91 ttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 151  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||||||| || |||||||    
T  24817274 ttttcttcggaacttgtagcctcaacatgcttcttgcaatactcaataactttcgccaaga 24817214  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 24817125 - 24817071
Alignment:
Q  228 cacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttc 282  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||    
T  24817125 cacaacctcgtcgatttcaaaggtctcgccgtcggaacttttcaaggtgatcttc 24817071  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 24406504 - 24406553
Alignment:
Q  108 agcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 157  Q
    |||||||||||||||||| |||||||| |||||||| ||||||| |||||    
T  24406504 agcctcaacatgcttcttacaatactcgataacctttgccaagatcttgc 24406553  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 24412704 - 24412655
Alignment:
Q  108 agcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 157  Q
    |||||||||||||||||| |||||||| |||||||| | ||||| |||||    
T  24412704 agcctcaacatgcttcttacaatactcgataacctttgtcaagatcttgc 24412655  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 8981988 - 8981943
Alignment:
Q  106 gcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 151  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  8981988 gcagcctcaacatgcttcttgcaatactcaatcaccttcgccaaga 8981943  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 8991493 - 8991442
Alignment:
Q  106 gcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 157  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||| |||||    
T  8991493 gcagcgtcaacatgcttcttgcaatactcaatcaccttcgccaagatcttgc 8991442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 35390508 - 35390589
Alignment:
Q  70 ttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 151  Q
    ||||| |||||||  ||| | ||||| ||||||||  | |||||||||||||| || ||||||||||||||||| |||||||    
T  35390508 ttaagatcatcatgtaagggtttttcttcggaactcccggcctcaacatgctttttacaatactcaataaccttcgccaaga 35390589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 36687067 - 36687116
Alignment:
Q  233 cctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttc 282  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||| ||||    
T  36687067 cctcgtcgatttcaaaggtctccccgtcggaactcttcagggtgatcttc 36687116  T

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