View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_high_13 (Length: 434)
Name: NF18776_high_13
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 330450 - 330047
Alignment:
| Q |
1 |
ttttttcttatatatgagatgagaccgggtgaagtaagatagaaacaaatatatttggcgtcgtcgcatatggtgtcagtaatttgttaagagttaagcc |
100 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
330450 |
ttttttcatatatatgagatgagaccggatgaagtaagatagaaacaaatatattaggcgtcgtcgcatatgatgtcagtaatttgttaagagttaagcc |
330351 |
T |
|
| Q |
101 |
cgtgagcccaaaccaaaaactagttcattaggtaggagagcctcgtggcttaagtgctcttaggttgcaatcaaggtcacactaacttcatgtgttttaa |
200 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
330350 |
cgtgagcccaaatcaaaaactagctcattaggtaggagagcctcgtggcttaagtgctcttaggttgcaatcaaggccacactaacttcatgtgttttaa |
330251 |
T |
|
| Q |
201 |
atacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatacttatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330250 |
atacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatacttatgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaat |
330151 |
T |
|
| Q |
301 |
agaacaatttctcctatcaaattgaaattttgcacattccattgttggtaattcttaatattttatgtaaaatagcaaaatacagagacttgcaatctat |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
330150 |
agaacaatttctcccatcaaattgaaattttgcacattccattactggtaattcttaatattttatgtaaaatagtaaaatacagagacttgcaatctat |
330051 |
T |
|
| Q |
401 |
tggt |
404 |
Q |
| |
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|||| |
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| T |
330050 |
tggt |
330047 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 37223635 - 37223591
Alignment:
| Q |
111 |
aaccaaaaactagttcattaggtaggagagcctcgtggcttaagt |
155 |
Q |
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|||||||||||||| |||||||| ||||||||| |||||||||| |
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| T |
37223635 |
aaccaaaaactagtccattaggtgggagagcctaatggcttaagt |
37223591 |
T |
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