View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_high_2 (Length: 626)
Name: NF18776_high_2
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 10 - 609
Target Start/End: Complemental strand, 33494779 - 33494178
Alignment:
| Q |
10 |
gcagagagaaggtacattttattcaaagtaaaaataactttgaagtcattatttagaatgtaataataataaaataaattatcatgataattattgatta |
109 |
Q |
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| T |
33494779 |
gcagagagaaggtacattttattcaaagtaaaaataactttgaagtgattatttagaatgtaataataataaaataaattatcatgataattattgatta |
33494680 |
T |
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| Q |
110 |
tggttcttaannnnnnnnnnnnnnn--caggtgtttaactttgtaaaattagctgagctgtactatgcagcaagccatggcatggacattatgggaccaa |
207 |
Q |
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| T |
33494679 |
tggttcttaatttttgattttttttttcaggtgtttaactttgtaaaattagctgagctgtactatgcagcaagccatggcatggacattatgggaccaa |
33494580 |
T |
|
| Q |
208 |
caaaaaaccgaagtgctgagaaagtgagaaaacttttttcactaattaatattgtgttgaaaattttatcttatttttgttctttatgcttagctttgtg |
307 |
Q |
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| T |
33494579 |
caaaaaaccgaagtgctgagaaagtgagaaaacttttttcactaattaatattgtgttgaaaattttatcttatttttgttctttatgcttagctttgtg |
33494480 |
T |
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| Q |
308 |
atttattactttgtttcagagtaatgttaacaaagctgtgttgttccaacctgcaagtcaatacctaccaatgatagacgaggttcgattttttcttctt |
407 |
Q |
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| T |
33494479 |
atttattactttgtttcagagtaatgttaacaaagctgtgttgttccaacctgcaagtcaatacctaccaatgatagacgaggttcgattttttcttctt |
33494380 |
T |
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| Q |
408 |
ctctattcccacaaaattggcattttgcaacatataagatattaataatttgtactttatgatatataattaatttcaggtgtacaaaatattgttggaa |
507 |
Q |
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| T |
33494379 |
ctctattcccacaaaattggcattttgcaacatataagatattaataatttgtactttatgatatataattaatttcaggtgtacaaaatattgttagaa |
33494280 |
T |
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| Q |
508 |
aaaacaaagtctgtctcaggagctaaggtagagaacaacaaattttgcttgtccgtgcactttcgttgtgttgatgaaaaggtacataattgtactcaac |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33494279 |
aaaacaaagtctgtctcaggagctaaggtagagaacaacaaattttgtttgtccgtgcactttcgttgtgttgatgaaaaggtacataattgtactcaac |
33494180 |
T |
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| Q |
608 |
at |
609 |
Q |
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|| |
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| T |
33494179 |
at |
33494178 |
T |
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