View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_high_20 (Length: 379)
Name: NF18776_high_20
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 26926649 - 26926339
Alignment:
| Q |
14 |
ttctgcggttccatactatttttgtggtcacttttgttctatatgcttatgaaagataaatatggcacagtaaaggtgaaaaatttgatctatagggtaa |
113 |
Q |
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| T |
26926649 |
ttctgcggttccatactatttttgtggtcacttttgttctatatgcttatgaaagataaatatggcacagtaaaggtgaaaaatttgatctatagagtaa |
26926550 |
T |
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| Q |
114 |
aagttcaagggtgaagactgaagactt--ctgtga---agtagtttacaaagagattaaatattgttgtcatgtgtaatatgtcagaaagaatagtttaa |
208 |
Q |
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| T |
26926549 |
aagttcaagggtgaagactgaagacttcactgtgaagtagtagtttacaaagagattaaatattgttgtcatgtgtaatatgtcagaaagaatagtttaa |
26926450 |
T |
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| Q |
209 |
tttatataagaacaagcaaatctattggtacattttcgctctgatgttcgaactttttaggtaaaatagtcttaaattaaagaaaactgagttattattg |
308 |
Q |
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| T |
26926449 |
tttatataagaacaaacaaatctattggtccatttttactctgatgttcgaactttttagg----------tcaaattaaagaaaactgagttattattg |
26926360 |
T |
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| Q |
309 |
tttgggtgcgcaatgacaatt |
329 |
Q |
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| T |
26926359 |
tttgggtgcgcaatgacaatt |
26926339 |
T |
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