View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_high_21 (Length: 378)
Name: NF18776_high_21
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 6070584 - 6070943
Alignment:
| Q |
1 |
cttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgtaggattatttctccctgaaattaattatttaat |
100 |
Q |
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| T |
6070584 |
cttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgttggattatttctccctgaaattaattatttaat |
6070683 |
T |
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| Q |
101 |
cttatttcaaatcatttttatatttatgagaaagccaaaatatatattcaatataactatttaaagcaaaagattgttagttcccgtgatgatggatcaa |
200 |
Q |
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| T |
6070684 |
cttatttcaaatcatttttatatttatgagaaagccaaaatatatattcaatatcactatttaaatcaaaagattgttagttcccgtgacgatggatcaa |
6070783 |
T |
|
| Q |
201 |
tttgttatccaatttaaactcgaattctccacttattcacaagtgaatttttaatcattagattatctgac-aaaaataaacattagaactcacttgcga |
299 |
Q |
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| T |
6070784 |
-ttggtatcgagtttaaactcgaattctccacttattcacgagtgaatttttaattattaggttatctgacaaaaaaaaaacattagaactcacttggca |
6070882 |
T |
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| Q |
300 |
agggttcatttagctgctcctgaggaggataagttccttttccttgtttttcctccgccatg |
361 |
Q |
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| T |
6070883 |
agggttcattta-ctgctcctgaggaggataagttccttgtccttgtttttcctctgccatg |
6070943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 6055834 - 6055738
Alignment:
| Q |
1 |
cttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgtaggattatttctccctgaaattaattattt |
97 |
Q |
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| T |
6055834 |
cttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgttggattatttctccctgaaattaattattt |
6055738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6085660 - 6085742
Alignment:
| Q |
1 |
cttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgtaggattatttctccct |
83 |
Q |
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||||||||||||| ||||||||||||||||| || |||||||||||||||| |||| || || ||||||| |||||| ||||| |
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| T |
6085660 |
cttcctttatttttctctctgcttcttctgcagtgacaccaactagctcaggccaacttgtttttgtagggttatttgtccct |
6085742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 6055740 - 6055693
Alignment:
| Q |
116 |
ttttatatttatgagaaagccaaaatatatattcaatataactattta |
163 |
Q |
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| T |
6055740 |
ttttatattaatgagaaagccaaaatatatgttcaatatcactattta |
6055693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 6086105 - 6086183
Alignment:
| Q |
282 |
attagaactcacttgcgaagggttcatttagctgctcctgaggaggataagttccttttccttgtttttcctccgccat |
360 |
Q |
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|||| |||| ||||| ||||||||||| |||||||||||||||||| |||||||| |||||||| ||||| ||||| |
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| T |
6086105 |
attataacttacttggcaagggttcattaggctgctcctgaggaggattagttccttgtccttgttgctcctcagccat |
6086183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 6055674 - 6055626
Alignment:
| Q |
213 |
tttaaactcgaattctccacttattcacaagtgaatttttaatcattag |
261 |
Q |
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||||| ||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
6055674 |
tttaagctcaaattctccacttaatcacgagtgaatttttaatcattag |
6055626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 6035557 - 6035477
Alignment:
| Q |
1 |
cttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgtaggattatttctcc |
81 |
Q |
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||||||||||||| |||| ||||||||| | || |||||||||||||| | |||| || || | ||||| |||||||||| |
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| T |
6035557 |
cttcctttatttttctctttgcttcttcaacagtgacaccaactagctctggccaacttgttttagtagggttatttctcc |
6035477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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