View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18776_high_23 (Length: 369)
Name: NF18776_high_23
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 31770641 - 31770970
Alignment:
| Q |
1 |
tccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31770641 |
tccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaa |
31770740 |
T |
|
| Q |
101 |
nnnnnnnnnnnncaacatcaggaagatatacagtacagaaattacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31770741 |
aaaccaaaaaaacaacatcaggaagatatacagtacagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtaggaaagcaatat |
31770840 |
T |
|
| Q |
201 |
atctacaatacttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31770841 |
atctacaatacttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaaca |
31770940 |
T |
|
| Q |
301 |
acaatggagaggtgtgataataacatcagt |
330 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
31770941 |
ataatggagaggtgtgataataacatcagt |
31770970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 7607896 - 7607982
Alignment:
| Q |
244 |
agagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaacaatggagaggtgtgataataacatcagt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
7607896 |
agagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaataatggagaggtgtgataataacagcagt |
7607982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 14184939 - 14184882
Alignment:
| Q |
212 |
ttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatgg |
269 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14184939 |
ttctaatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatgg |
14184882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 41810674 - 41810345
Alignment:
| Q |
1 |
tccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41810674 |
tccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaa |
41810575 |
T |
|
| Q |
101 |
nnnnnnnnnnnncaacatcaggaagatatacagtacagaaattacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41810574 |
aaaccaaaaaaacaacatcaggaagatatacagtacagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtagtaaagcaatat |
41810475 |
T |
|
| Q |
201 |
atctacaatacttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41810474 |
atctacaatacttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaaca |
41810375 |
T |
|
| Q |
301 |
acaatggagaggtgtgataataacatcagt |
330 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
41810374 |
ataatggagaggtgtgataataacatcagt |
41810345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 52131061 - 52130955
Alignment:
| Q |
212 |
ttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaacaatggagag |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
52131061 |
ttctcatttgatgatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatcggtattgaacaataatggagag |
52130962 |
T |
|
| Q |
312 |
gtgtgat |
318 |
Q |
| |
|
||||||| |
|
|
| T |
52130961 |
gtgtgat |
52130955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 53689493 - 53689436
Alignment:
| Q |
244 |
agagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa |
301 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
53689493 |
agaggaagaagaagagggaagcatggggctctgtagagtttgcatcggtattgaacaa |
53689436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 52311470 - 52311529
Alignment:
| Q |
242 |
acagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa |
301 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
52311470 |
acagagggagaagaagagggcaacatggggctctgtagagtttgcatcggtattgaacaa |
52311529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 37362394 - 37362477
Alignment:
| Q |
219 |
ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa |
301 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
37362394 |
ttgaagatgtttaatcaaaatgtgacagagggagaagaagagggaagcatggggctctgtagagtttgcatcagtattgaacaa |
37362477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 1971361 - 1971308
Alignment:
| Q |
248 |
ggagaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa |
301 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
1971361 |
ggagaagaagagggaagcatggggctctgtagagtttgcattggtattgaacaa |
1971308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 7841512 - 7841462
Alignment:
| Q |
250 |
agaagaagagggaagcatggggcactgtagagtttgcatgggtattgaacaa |
301 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
7841512 |
agaagaagagggaagcatggggttctgtagagtttgcat-ggtattgaacaa |
7841462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 16253096 - 16253157
Alignment:
| Q |
25 |
gcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaag |
86 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
16253096 |
gcaacgaaatcggaaaagtgcaatgcggtgaagaaatggatggagcgaaccttgaatcgaag |
16253157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 19962318 - 19962262
Alignment:
| Q |
239 |
gtgacagagggagaagaagagggaagc--atggggcactgtagagtttgcatgggta |
293 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
19962318 |
gtgacggagggagaagaagagggaagcatatggggctctgtagagtttgcatcggta |
19962262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University