View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18776_high_26 (Length: 336)
Name: NF18776_high_26
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 29279975 - 29279657
Alignment:
| Q |
1 |
gcaattgccaaaatgtctttttatctgaagacattttggttgatgatattacaatataaggataaataaaaccaatagttgtcgatataatatggtttaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279975 |
gcaattgccaaaatggctttttatctgaagacattttggttgatgatattacaatataaggataaataaaaccaatagttgtcgatataatatggtttaa |
29279876 |
T |
|
| Q |
101 |
gtatagaatagcaaatttataaacnnnnnnnnn-agaagcaaatttataaacttcaaatttattgttctgatacgtcaaaatgtattacataaatcaaat |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279875 |
gtatagaatagcaaatttataaacttttttttttagaagcaaatttataaacttcaaatttattgttctgatacgtcaaaatgtattacataaatcaaat |
29279776 |
T |
|
| Q |
200 |
acagctaaagcataagaaatgccaagctgtatcaaaacagatcatagtttgatacagagaaaagtacaaggtagtctccaagacctttaatgcaaaacat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279775 |
acagctaaagcataagaaatgccaagctgtatcaaaacagatcatagtttgatacagagaaaggtacaaggtagtctccaagacctttaatgcaaaacat |
29279676 |
T |
|
| Q |
300 |
ggataagaagcactactcc |
318 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29279675 |
ggataagaagcactactcc |
29279657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 29271334 - 29271254
Alignment:
| Q |
181 |
tgtattacataaatcaaatacagctaaagcataagaaatgccaagctgtatcaaaacagatcatagtttgatacagagaaa |
261 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
29271334 |
tgtattacatgaatcaaatctagctaaagcataagaaatgcaaagctatatcaaaagagatcatagtttgatacagagaaa |
29271254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 29271505 - 29271430
Alignment:
| Q |
13 |
atgtctttttatctgaagacattttggttgatgatattacaatataaggataaataaaaccaatagttgtcgatata |
89 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||| |||||| |
|
|
| T |
29271505 |
atgtctttttatcagaagacattttggttgatgat-ttacaacataaggatatataaaaagaatagttgttgatata |
29271430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 29271183 - 29271155
Alignment:
| Q |
259 |
aaaagtacaaggtagtctccaagaccttt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29271183 |
aaaagtacaaggtagtctccaagaccttt |
29271155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University