View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18776_high_27 (Length: 336)
Name: NF18776_high_27
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 53118499 - 53118378
Alignment:
| Q |
202 |
gtttcggtataatatatt-aattgacgtatttaatagcatgtttatgccattttataaatatataattttctatcaatcagtacgtcaatttctatttta |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53118499 |
gtttcggtataatatatttaattgacgtatttaatagcatgtttatgccattttataaatatataattttctatcaatcagtacgtcaatttctatttta |
53118400 |
T |
|
| Q |
301 |
cactatacaaacttaagaataa |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
53118399 |
cactatacaaacttaagaataa |
53118378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 53118684 - 53118593
Alignment:
| Q |
20 |
atacgtgaccacactcatttgatctgattgtacacacaaagaaaagagttagtgtaaattattatcatttgttgaataataagagtataaga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53118684 |
atacgtgaccacactcatttgatctgattgtacacacaaagaaaagagttagtgtaaattattatcatttgttgaataataagagtataaga |
53118593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University