View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18776_high_31 (Length: 313)
Name: NF18776_high_31
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 42475510 - 42475769
Alignment:
| Q |
20 |
tatttagctgtttgttaaacatgttgcctgtttgatcatttgtttgataaatatgttgatgatcatttattcatttatatcttattttcaaatgaggatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42475510 |
tatttagctgtttgttaaacatgttgcctgtttgatcatttgtttgataaatatgttgatgatcatttattcatttatatcttattttcaaatgaggatt |
42475609 |
T |
|
| Q |
120 |
ggggaaattgatcttggttttgtcaaattgaaatagacatttgagcattgtaaaattttctctgctttgtcatatatggaggaagatcattgttgaacaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42475610 |
ggggaaattgatcttggttttgtcaaattgaaatagacatttgagcattgtaaaattttctctgctttgtcgtatatggaggaagatcattgttgaacaa |
42475709 |
T |
|
| Q |
220 |
gatatctatgtttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42475710 |
gatatctatgtttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
42475769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 42468267 - 42468353
Alignment:
| Q |
192 |
tatatggaggaagatcattgttgaacaagatatctatgtttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
279 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
42468267 |
tatatggagaaagatcattgtctaacaagatatctatatttgaatgcagcattttgattc-gtaagtggatatttcatctcacaggtt |
42468353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 42480904 - 42481016
Alignment:
| Q |
20 |
tatttagctgtttgttaaacatgttgcctgtttgatc-atttgtttgataaatatgttgatgatcatttattcatttatatcttattttcaaatgaggat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | | ||| ||| ||| |||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
42480904 |
tatttagctgtttgttaaacatgttgcctgtttgatcaaatggttggatcaatctgttga-------ttatt-atttatatcttattttcaaatgagggc |
42480995 |
T |
|
| Q |
119 |
tggggaaattgatcttggttt |
139 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
42480996 |
ttgggaaattgatctttgttt |
42481016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University