View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_high_33 (Length: 294)
Name: NF18776_high_33
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_33 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 31103116 - 31102927
Alignment:
| Q |
13 |
aatatgataaaatttaatttttagttgatttaattatatacaatcattgttgcatttatcctttaccattacaatagaagcatttacataataacacaat |
112 |
Q |
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| T |
31103116 |
aatatcataaaatttaatttttagttgatttaattatatacaatcattgttgcatttatcctttaccattacaatagaagcatttacataattatgcaat |
31103017 |
T |
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| Q |
113 |
cacttgtaatagcaaagaacaacacaacaataatcattataaaatagtcaaatcatggggacaacagcaacatgaaattgagtccccaac |
202 |
Q |
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| T |
31103016 |
cacttgtaatagcaaagaacaacacaacaataatcattataaaatagtcaaatcatggggacaacaacaatatgagattgagtccccaac |
31102927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 31080762 - 31080639
Alignment:
| Q |
171 |
ggacaacagcaacatgaaattgagtccccaactgcgaattaataagttatatatactcttattttataggtaaacctccgtgcctgtttcagtacatact |
270 |
Q |
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| T |
31080762 |
ggacaacaataatatgagattgagtctccaactatgagttgataagttatatacactcttattttataggtaaaccttcgtgcatgttttaacacatact |
31080663 |
T |
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| Q |
271 |
cgatgtgggactagttgtggtata |
294 |
Q |
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| T |
31080662 |
ctatgtgggacttgttgtggtata |
31080639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 31027177 - 31027102
Alignment:
| Q |
219 |
atatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggactagttgtggtata |
294 |
Q |
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| T |
31027177 |
atatacactcttattttataggtaaacctctgtgcctgttttaacacatactcgatgtgagactagttgtggtata |
31027102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 294
Target Start/End: Complemental strand, 31056913 - 31056766
Alignment:
| Q |
149 |
ttataaaatagtcaaatcatggggacaacagcaacatgaaattgagtc--cccaactgcgaattaataagttatatatactcttattttataggtaaacc |
246 |
Q |
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| T |
31056913 |
ttatataacagtcaaatcttggggacagcagcaatatgagattgggtgtgccaaactatgagttaatatttgatatacaatcttattttatatgtaaacc |
31056814 |
T |
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| Q |
247 |
tccgtgcctgtttcagtacatactcgatgtgggactagttgtggtata |
294 |
Q |
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| T |
31056813 |
ttcctgcctgttttaacacatactcgatgtgggacttgttgtggtata |
31056766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 31035593 - 31035513
Alignment:
| Q |
214 |
aagttatatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggactagttgtggtata |
294 |
Q |
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| T |
31035593 |
aagtgatatacactcttcttttataggaaaaccttcatgactgttttaacacatactcgatgtggaacttgttgtggtata |
31035513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 31046018 - 31045955
Alignment:
| Q |
219 |
atatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggact |
282 |
Q |
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| T |
31046018 |
atatacactcttattttatagggaaatcttcatgcctgttttaacacatactcgatgtgggact |
31045955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 294
Target Start/End: Original strand, 31096226 - 31096372
Alignment:
| Q |
148 |
attataaaatagtcaaatcatggggacaacagcaacatgaaattgagtccccaactgcgaattaataagttatatatactcttattttataggtaaacct |
247 |
Q |
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| T |
31096226 |
attataaaatggtcaaaactttgggacaacaaaagtattagattgggtccccaactatgtgttaataagtgatgtacactcttattttataagtaaaact |
31096325 |
T |
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| Q |
248 |
ccgtgcctgtttcagtacatactcgatgtgggactagttgtggtata |
294 |
Q |
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| T |
31096326 |
tagtgcctattttaacgtatactcgatgtgggacttgttgtggtata |
31096372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 293
Target Start/End: Original strand, 4962 - 5061
Alignment:
| Q |
194 |
gtccccaactgcgaattaataagttatatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggactagttgtggtat |
293 |
Q |
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| T |
4962 |
gtccccaactatgagttaataagtgatatacactcttattttatagataaacctcagtgcctgttttaacgtatactctatgtgggacttgttgtggtat |
5061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 170642 - 170740
Alignment:
| Q |
149 |
ttataaaatagtcaaatcatggggacaacagcaacatgaaattgagtccccaactgcgaattaataagttatatatactcttattttataggtaaacct |
247 |
Q |
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| T |
170642 |
ttataaaacaatcaaatcatgggaataacaaccgtatgagattgggtccccaactatgggttaataagtgatacacactcttattttataggtaaacct |
170740 |
T |
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