View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18776_high_34 (Length: 288)

Name: NF18776_high_34
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18776_high_34
NF18776_high_34
[»] chr7 (4 HSPs)
chr7 (11-272)||(37747635-37747895)
chr7 (54-273)||(37749243-37749452)
chr7 (230-273)||(45809776-45809819)
chr7 (224-273)||(33829603-33829652)
[»] chr8 (3 HSPs)
chr8 (54-273)||(43041263-43041481)
chr8 (54-273)||(43039371-43039589)
chr8 (54-273)||(14196762-14196978)
[»] chr2 (6 HSPs)
chr2 (54-273)||(28028007-28028225)
chr2 (54-269)||(33413660-33413874)
chr2 (54-174)||(13109068-13109186)
chr2 (55-115)||(13107169-13107228)
chr2 (218-272)||(4659641-4659695)
chr2 (221-273)||(5188293-5188345)
[»] chr1 (3 HSPs)
chr1 (54-273)||(3585456-3585672)
chr1 (53-273)||(38206914-38207134)
chr1 (230-273)||(7493629-7493672)
[»] chr6 (4 HSPs)
chr6 (86-177)||(34391113-34391204)
chr6 (58-96)||(34486289-34486327)
chr6 (231-273)||(31798871-31798913)
chr6 (92-177)||(34486361-34486445)
[»] chr4 (3 HSPs)
chr4 (97-177)||(53611372-53611450)
chr4 (218-270)||(29298574-29298626)
chr4 (201-273)||(53611286-53611358)
[»] scaffold0330 (1 HSPs)
scaffold0330 (54-96)||(16982-17024)
[»] scaffold0240 (1 HSPs)
scaffold0240 (54-96)||(1000-1042)
[»] chr3 (2 HSPs)
chr3 (54-100)||(54017245-54017291)
chr3 (56-100)||(54017198-54017242)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 37747635 - 37747895
Alignment:
Q  11 cacagacacggatataaacatagacgtcaccataccacataggtgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactc 110  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37747635 cacagacacgaatataaacatagacgtcgccataccacagaggtgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactc 37747734  T
Q  111 acacttggagaggaaattacaaaagaatgataaaaactcttatattattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatac 210  Q
    |||||| ||||||||| |||| | ||||||| ||||||||| |||||||||||||||||  |||||||||| |||||||||||||| |||||||||||||    
T  37747735 acacttagagaggaaactacagaggaatgat-aaaactcttctattattgaatatgagaggtatgagatgtttgctatacaatctatatcaactgaatac 37747833  T
Q  211 aacagcgaagtatttataagctaagttgagtaacttgcactacaagccactaactaactaac 272  Q
    || ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  37747834 aaaagccaagtatttataggctaagttgagtaacttgcactacaagccactaacaaactaac 37747895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 54 - 273
Target Start/End: Original strand, 37749243 - 37749452
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||| ||||||||| |    
T  37749243 tgatagaacatgcacatacataattgagagaaagattagaatgatctctacacactcacacttagagagaaaactacaaaggaatgat-aaaactcttct 37749341  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    ||||||||         |||||||||||||||||||||||||| ||||||||||||||| ||  ||||| ||||| ||||||||||||||||||||||||    
T  37749342 attattga---------atatgagatgtgtgctatacaatctatatcaactgaatacaaaagttaagtacttataggctaagttgagtaacttgcactac 37749432  T
Q  254 aagccactaactaactaact 273  Q
    ||||||||||| ||||||||    
T  37749433 aagccactaacaaactaact 37749452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 45809776 - 45809819
Alignment:
Q  230 gctaagttgagtaacttgcactacaagccactaactaactaact 273  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  45809776 gctaagttgagtaacttgcactacaagcctctaactaactaact 45809819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 33829652 - 33829603
Alignment:
Q  224 ttataagctaagttgagtaacttgcactacaagccactaactaactaact 273  Q
    ||||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  33829652 ttataggctaagttgagtaacttgcactacaagctactaacaaactaact 33829603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 43041481 - 43041263
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| ||||| |    
T  43041481 tgatagaacatgcacatacataattgagagaaatattagaatgatctctacacactcacacttatagaggaaactacaaaagaatgataaaa-ctcttct 43041383  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  43041382 attattgaatatgagagatatgagatgtgtgctatacaatctatatcaactgaatacaaaagctaagtacttataggctaagttgagtaacttgcactac 43041283  T
Q  254 aagccactaactaactaact 273  Q
    ||||||||||| ||||||||    
T  43041282 aagccactaacaaactaact 43041263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 43039589 - 43039371
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||||| |    
T  43039589 tgatagaacatgcacatacataattgagagaaatattagaatgatctctacacactcacatttagagaggaaactacaaaagaatgataaaa-ctcttct 43039491  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    || ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||  ||||| ||||| |||||||||||||||||||| |||    
T  43039490 atcattgaatatgagagatatgagatgtgtgctatacaatctatatcaactgaatacaaaagataagtacttataggctaagttgagtaacttgcaatac 43039391  T
Q  254 aagccactaactaactaact 273  Q
    ||||||||||| ||||||||    
T  43039390 aagccactaacaaactaact 43039371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 14196978 - 14196762
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||| ||||||  |||||| ||||||||| |    
T  14196978 tgatagaacatgcacatacataattgagagaaaaattagaatgatctctacacactcacacttaaagaggaaactacaaagaaatgat-aaaactcttct 14196880  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatct-acatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcacta 252  Q
    |||||||||||||||| |||||||||||| ||||||||||||   ||| || ||||||||     | ||| ||||| | |||||||| ||||||||||||    
T  14196879 attattgaatatgagagatatgagatgtgagctatacaatctgtaatctacagaatacaa---acatgtacttataggataagttgaataacttgcacta 14196783  T
Q  253 caagccactaactaactaact 273  Q
    |||||| ||||| ||||||||    
T  14196782 caagcctctaacaaactaact 14196762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 28028225 - 28028007
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| ||||| |    
T  28028225 tgatagaacatgcacatacataattgagagaaatattagaatgatctctacacactcacacttaaagaggaaactacaaaagaatgataaaa-ctcttct 28028127  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  28028126 attattgaatatgagagatatgagatgtgtgctatacaatctatatcaactgaatacaaaagctaagtacttataggctaagttgagtaacttgcactac 28028027  T
Q  254 aagccactaactaactaact 273  Q
    ||||||||||| ||||||||    
T  28028026 aagccactaacaaactaact 28028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 54 - 269
Target Start/End: Original strand, 33413660 - 33413874
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  ||||||||| |||||| |||||||||||  |||| |    
T  33413660 tgatagaacatgcacatacataattgagagaaagaatagaatgatctctacacactcacactatgagaggaaactacaaaggaatgataaaat-tcttct 33413758  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||| ||||| ||||| | |||||||| |||||||||||||    
T  33413759 attattgaatatgagagatatgagatgtgtgctatacaatctgtatcaactgaatacaaaagctaagtacttataggttaagttgaataacttgcactac 33413858  T
Q  254 aagccactaactaact 269  Q
    ||||||||||||||||    
T  33413859 aagccactaactaact 33413874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 13109068 - 13109186
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacac-ttggagaggaaattacaaaagaatgataaaaactctta 152  Q
    |||||||||||||||||| | ||| ||||||||| | ||||||||||| ||| |||||||| || ||||| ||| |||||| ||||||| ||| |||||     
T  13109068 tgatagaacatgcacatatagaattgagagaaagttaagaatgatctc-acatactcacactttagagagaaaactacaaatgaatgat-aaatctctt- 13109164  T
Q  153 tattattgaatatgagatatat 174  Q
    ||||||||||||||||| ||||    
T  13109165 tattattgaatatgagagatat 13109186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 13107169 - 13107228
Alignment:
Q  55 gatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacact 115  Q
    |||| |||||||||||||| |||||||||||||||||||||||| || |||||||||||||    
T  13107169 gataaaacatgcacatacagaatcgagagaaagattagaatgatttc-acacactcacact 13107228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 4659695 - 4659641
Alignment:
Q  218 aagtatttataagctaagttgagtaacttgcactacaagccactaactaactaac 272  Q
    ||||||||||| ||||||| |||| |||||||||||| | |||||||||||||||    
T  4659695 aagtatttataggctaagtagagttacttgcactacaggtcactaactaactaac 4659641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 5188345 - 5188293
Alignment:
Q  221 tatttataagctaagttgagtaacttgcactacaagccactaactaactaact 273  Q
    |||||||| |||||||   ||||||||||||||||| ||| ||||||||||||    
T  5188345 tatttataggctaagtgttgtaacttgcactacaagtcacaaactaactaact 5188293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 3585672 - 3585456
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||| |    
T  3585672 tgatagaacatgcatatacataattgagagaaagattagaatgatctctacacactcacacttagagaggaaactacaaaggaatgat-aaaactcttct 3585574  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatct-acatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcacta 252  Q
     ||||||||||| ||| |||||||||||||||||||||||||   ||| ||| |||||||     | |||  |||| |||||||||||||||||||||||    
T  3585573 gttattgaatataagagatatgagatgtgtgctatacaatctgtaatctacttaatacaa---acatgtacgtataggctaagttgagtaacttgcacta 3585477  T
Q  253 caagccactaactaactaact 273  Q
    |||||| ||||| ||||||||    
T  3585476 caagcctctaacaaactaact 3585456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 53 - 273
Target Start/End: Complemental strand, 38207134 - 38206914
Alignment:
Q  53 gtgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactctta 152  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||||||||||| | ||| || ||||| ||| || ||| ||||||| |||||||||     
T  38207134 gtgatagaacatgcacatgcataattaagagaaagattagaatgatctctacacatttacatttagagagaaaactataaaggaatgat-aaaactcttc 38207036  T
Q  153 tattattgaatatgagatatatgagatgtgtgctatacaatct-acatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcact 251  Q
    ||||||||||||||||| |||  ||||||||| ||||||||||   ||| |||||||||||    | | |  ||||||||||||||||||||||||||||    
T  38207035 tattattgaatatgagagatacaagatgtgtgttatacaatctgtaatctactgaatacaaacatgtacttattataagctaagttgagtaacttgcact 38206936  T
Q  252 acaagccactaactaactaact 273  Q
    ||||||| ||||| ||||||||    
T  38206935 acaagcctctaacaaactaact 38206914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 7493672 - 7493629
Alignment:
Q  230 gctaagttgagtaacttgcactacaagccactaactaactaact 273  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  7493672 gctaagttgagtaacttgcactacaagcctctaactaactaact 7493629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 34391204 - 34391113
Alignment:
Q  86 agattagaatgatctctacacactcacacttg-gagaggaaattacaaaagaatgataaaaactcttatattattgaatatgagatatatgag 177  Q
    |||| ||||||||| | ||||||||||||||  ||||||||| |||||| ||||||||||||| ||| ||||||||||| ||||| |||||||    
T  34391204 agatcagaatgatcgccacacactcacactttagagaggaaactacaaaggaatgataaaaacactt-tattattgaatgtgagagatatgag 34391113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 34486289 - 34486327
Alignment:
Q  58 agaacatgcacatacataatcgagagaaagattagaatg 96  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34486289 agaacatgcacatacataatcgagagaaagattagaatg 34486327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 31798913 - 31798871
Alignment:
Q  231 ctaagttgagtaacttgcactacaagccactaactaactaact 273  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||    
T  31798913 ctaaattgagtaacttgcactacaagccactaacaaacaaact 31798871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 34486361 - 34486445
Alignment:
Q  92 gaatgatctctacacactcacacttgga-gaggaaattacaaaagaatgataaaaactcttatattattgaatatgagatatatgag 177  Q
    |||||||||| ||||||||||| ||  | ||||||| |||||||||||||| ||||||||| ||||||| ||| ||||| |||||||    
T  34486361 gaatgatctccacacactcacattttaaagaggaaactacaaaagaatgat-aaaactctt-tattattaaatgtgagagatatgag 34486445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 53611450 - 53611372
Alignment:
Q  97 atctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttatattattgaatatgagatatatgag 177  Q
    ||||||||||||||||| || ||||||||| |||||| ||||||| ||||||||| ||||||||||| ||||| |||||||    
T  53611450 atctctacacactcacatttagagaggaaactacaaaggaatgat-aaaactctt-tattattgaatttgagagatatgag 53611372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 29298574 - 29298626
Alignment:
Q  218 aagtatttataagctaagttgagtaacttgcactacaagccactaactaacta 270  Q
    ||||| ||||| |||||||||||| |||||| ||||| ||| |||||||||||    
T  29298574 aagtacttataggctaagttgagttacttgctctacatgccgctaactaacta 29298626  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 53611358 - 53611286
Alignment:
Q  201 aactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactacaagccactaactaactaact 273  Q
    ||||||| |||| | | ||||| | ||| ||||||| |||| |||||||||||||| ||||||| ||||||||    
T  53611358 aactgaacacaaaaactaagtactcataggctaagtggagttacttgcactacaagtcactaaccaactaact 53611286  T

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Target: scaffold0330 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 16982 - 17024
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatg 96  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  16982 tgatagaacatgcacatacagaatcaagagaaagattagaatg 17024  T

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Target: scaffold0240 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 1000 - 1042
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatg 96  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  1000 tgatagaacatgcacatacagaatcaagagaaagattagaatg 1042  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 54017291 - 54017245
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatct 100  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  54017291 tgatagaacacgcacatacaaaattgagagaaagattagaatgatct 54017245  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 54017242 - 54017198
Alignment:
Q  56 atagaacatgcacatacataatcgagagaaagattagaatgatct 100  Q
    |||||||||||| ||||||||| ||||||| ||||||| ||||||    
T  54017242 atagaacatgcatatacataattgagagaacgattagagtgatct 54017198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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