View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_high_38 (Length: 271)
Name: NF18776_high_38
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 10049037 - 10048796
Alignment:
| Q |
13 |
aatattacagaagaaaaacaaataattctatgaaaagtatttaaattgacatgcattgggaggaaagtattcaaaaagtcaataatagaaggaaagtctt |
112 |
Q |
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| T |
10049037 |
aatattacagaagaaagacaaataattctatgaaaagtatttaaattgacatgcgttgggaggaaagtatttaaaaagtcaataatagaaggaaagtatt |
10048938 |
T |
|
| Q |
113 |
taattcattgaaataagatgataaatttattgatcttttggtatgtgtaaataaaaaatggacaactataaagaaataaagtaattaacaactataagta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10048937 |
taattcattgaaataagatgataaatttattgatctttgggtatgtgtaaataaaaaatggacaactataaagaaataaagtaattaacaactataagta |
10048838 |
T |
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| Q |
213 |
acggaaattacaatacaattacgaatacaggcaggatcatag |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
10048837 |
acggaaattacaatacaattacgaatacaggcaggatcatag |
10048796 |
T |
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