View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_high_4 (Length: 605)
Name: NF18776_high_4
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Complemental strand, 24193354 - 24192788
Alignment:
| Q |
18 |
accttgcccatttcctttgttggagtggtatcttaaaaatatttaaccattgaccaaacacaaacacattctaattttggaactaatactttgcttctag |
117 |
Q |
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| T |
24193354 |
accttgcccattttctttgttggagtggtatcttaaaa-tatttaaccattgaccaaacacaaacacattctaattttggaactaatactttgcttctag |
24193256 |
T |
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| Q |
118 |
agtgagggtatacagggaattatgac--aatgattgtgctaagtttatcttctttaataatcagaacatcatgattcctaatgatcgagctttgaaattt |
215 |
Q |
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| T |
24193255 |
agtgagggtatacagggaattatgacttaatgattgtgctaagtttatcttctttaataatcagaacatcatgattcctaatgatcgagctttgaaattt |
24193156 |
T |
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| Q |
216 |
ttgaaatgtatgagctcctggtctatgtgtaccagttaattcagcatgctgtttcaaaatttaggtttgttttccctgcattgggtggcttgctgtttgg |
315 |
Q |
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| T |
24193155 |
tttaaatgtatgagctcctggtctatgtgtacc----------------tgtttcaaaatttaggtttgttttccctgcattgggtggcttgctgtttgg |
24193072 |
T |
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| Q |
316 |
ttatgatattggtgccacatccggtgctacaatttcactgcaggtaaaaacttgtcaatcagtgtctgtcaattgcatttctttcctgttagagcagtaa |
415 |
Q |
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| T |
24193071 |
ttatgatattggtgccacatccggtgctacaatttcactgcaggtaaaaacttgtcaatcagtgtctgtcaattgcatttctttcctgttagagcagtaa |
24192972 |
T |
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| Q |
416 |
cataaattgtttttcgtttcgttcatttgaattcacagtcacctgagcttagcggtgtcgcttggtccaatctttcttccattcagcttggtcttgtggt |
515 |
Q |
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| T |
24192971 |
cataaattgtttttcgtttcgttgatttgaattcacagtcacctgagcttagcggtgtcgcttggtccaatctttcttccattcagcttggtcttgtggt |
24192872 |
T |
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| Q |
516 |
atgatttttgtgtcctagttggaaaacatcttgcttgcagtttatggaaaagttataatcatctttatgcataagtataatcta |
599 |
Q |
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| T |
24192871 |
atgatttttgtgtcctagttggaaaacatcttgcttgcagtttatggaaaagttataatcatctttatgcataagtataatcta |
24192788 |
T |
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