View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_high_42 (Length: 249)
Name: NF18776_high_42
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 42763045 - 42762815
Alignment:
| Q |
1 |
tttctatatgctcctattttgaattttattacaattttgtaggaagcttattggagcaagatannnnnnnaaaggctttctggcaaatccttatagagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42763045 |
tttctatatgctcctattttgaattttattacaattttgtagaaagcttattggagcaagatatttttttaaaggctttctggcaaatccttatagagcc |
42762946 |
T |
|
| Q |
101 |
aaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatggttcacacactttatcaactgccggaggaaatttcgttgctaatgcaagtgtatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42762945 |
aaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatggttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtgtatttg |
42762846 |
T |
|
| Q |
201 |
gcaatggaaacggaacagcaagtggtggatc |
231 |
Q |
| |
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|||||||||| |||||||||||||||||||| |
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| T |
42762845 |
gcaatggaaatggaacagcaagtggtggatc |
42762815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 42743932 - 42743834
Alignment:
| Q |
133 |
tgaaggtcatggttcacacactttatcaactgccggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaacggaacagcaagtggtggatc |
231 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42743932 |
tgaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatc |
42743834 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 42753291 - 42753193
Alignment:
| Q |
133 |
tgaaggtcatggttcacacactttatcaactgccggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaacggaacagcaagtggtggatc |
231 |
Q |
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| T |
42753291 |
tgaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatc |
42753193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 117 - 231
Target Start/End: Original strand, 42734565 - 42734679
Alignment:
| Q |
117 |
atagtgcacgggatagtgaaggtcatggttcacacactttatcaactgccggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaacggaac |
216 |
Q |
| |
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||||||| || || |||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||| |
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| T |
42734565 |
atagtgcccgtgacagtgtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtgtatttggctatggaaatggaac |
42734664 |
T |
|
| Q |
217 |
agcaagtggtggatc |
231 |
Q |
| |
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||||||||||||||| |
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| T |
42734665 |
agcaagtggtggatc |
42734679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 42717320 - 42717206
Alignment:
| Q |
117 |
atagtgcacgggatagtgaaggtcatggttcacacactttatcaactgccggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaacggaac |
216 |
Q |
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|
|||||||||| || | ||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || ||||| |
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| T |
42717320 |
atagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaatggaac |
42717221 |
T |
|
| Q |
217 |
agcaagtggtggatc |
231 |
Q |
| |
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||||||||||||||| |
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| T |
42717220 |
agcaagtggtggatc |
42717206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 42769819 - 42769704
Alignment:
| Q |
116 |
catagtgcacgggatagtgaaggtcatggttcacacactttatcaactgccggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaacggaa |
215 |
Q |
| |
|
||||||||||| || ||| |||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
42769819 |
catagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaa |
42769720 |
T |
|
| Q |
216 |
cagcaagtggtggatc |
231 |
Q |
| |
|
|||||||||||||||| |
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| T |
42769719 |
cagcaagtggtggatc |
42769704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 42744070 - 42744008
Alignment:
| Q |
2 |
ttctatatgctcctattttgaatttt-attacaattttgtaggaagcttattggagcaagata |
63 |
Q |
| |
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|||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
42744070 |
ttctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagata |
42744008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 42753429 - 42753367
Alignment:
| Q |
2 |
ttctatatgctcctattttgaatttt-attacaattttgtaggaagcttattggagcaagata |
63 |
Q |
| |
|
|||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
42753429 |
ttctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagata |
42753367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42734442 - 42734505
Alignment:
| Q |
1 |
tttctatatgctcctattttgaatttt-attacaattttgtaggaagcttattggagcaagata |
63 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
42734442 |
tttctatatgctcctgttttgaattttaattacatccttgtaggaagcttattggcgcaagata |
42734505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 23040546 - 23040640
Alignment:
| Q |
137 |
ggtcatggttcacacactttatcaactgccggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaacggaacagcaagtggtggatc |
231 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
23040546 |
ggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtatttggcaatggccgaggaacagcaagtggtggatc |
23040640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 23040409 - 23040466
Alignment:
| Q |
7 |
tatgctcctattttgaatttt-attacaattttgtaggaagcttattggagcaagata |
63 |
Q |
| |
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||||||| || |||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
23040409 |
tatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagata |
23040466 |
T |
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