View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18776_high_47 (Length: 234)
Name: NF18776_high_47
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_high_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 35314306 - 35314104
Alignment:
| Q |
14 |
aatataatgttggtatatttgtagtatatatgcatgataaaataatataggtaatannnnnnnnnnnnnnnnagaggatataggtgatcgacttgtatat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
35314306 |
aatataatgttggtatatttgtagtatatatgcatgataaaataatataggtgatattttttatttttttt-agaggatataggtgatcgacttgtatat |
35314208 |
T |
|
| Q |
114 |
atgatatatgacgaaatataattgaatacaattacaatttacaagtatcgaagacatgcattaagtagtatacatattcctcttaaacttgatcacttat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35314207 |
atgatatatgacgaaatataattgaatacaattacaatttacaagtatcgaagacatgcattaagtagtatacatattcctcttaaacttgatcacttat |
35314108 |
T |
|
| Q |
214 |
tatt |
217 |
Q |
| |
|
|||| |
|
|
| T |
35314107 |
tatt |
35314104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University