View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18776_high_9 (Length: 500)

Name: NF18776_high_9
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18776_high_9
NF18776_high_9
[»] chr1 (1 HSPs)
chr1 (380-440)||(29416185-29416245)
[»] chr3 (1 HSPs)
chr3 (442-484)||(24202025-24202067)
[»] chr5 (1 HSPs)
chr5 (382-440)||(36680659-36680717)


Alignment Details
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 29416185 - 29416245
Alignment:
Q  380 ccgttaggagaatagttggttaaatttcgtaaaacgcgggaagaaacaggagtgacaagat 440  Q
    ||||||||||||| ||||||| ||||| || |||||||||||||||||||||||| |||||    
T  29416185 ccgttaggagaatggttggttgaatttggtgaaacgcgggaagaaacaggagtgagaagat 29416245  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 24202067 - 24202025
Alignment:
Q  442 gaagaaaacaaaaccagacgaagcattatgattaggaagaagg 484  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  24202067 gaagaaaacaaaaccagacgaagcattaggattaggaagaagg 24202025  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 36680659 - 36680717
Alignment:
Q  382 gttaggagaatagttggttaaatttcgtaaaacgcgggaagaaacaggagtgacaagat 440  Q
    ||||||||||| |||| || |||||||| | ||||||||||||| |||||||| |||||    
T  36680659 gttaggagaatggttgcttgaatttcgtgagacgcgggaagaaataggagtgagaagat 36680717  T

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