View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18776_low_1 (Length: 696)
Name: NF18776_low_1
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 18 - 622
Target Start/End: Original strand, 4903528 - 4904132
Alignment:
| Q |
18 |
gaaacttcttcatgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctctctacagtgtgtttggtgcaataattcg |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903528 |
gaaacttcttcacgatagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctctctacagtgtgtttggtgcaataattcg |
4903627 |
T |
|
| Q |
118 |
attgaagattcatcacatctttttcttcattgcgaaggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctccta |
217 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903628 |
attgaagattcaacacatatttttcttcattgcgaaggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaattcctccta |
4903727 |
T |
|
| Q |
218 |
atctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttg |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903728 |
atctgtttattatgtggcaatgttggaatggtgagtttttgaacaaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttg |
4903827 |
T |
|
| Q |
318 |
gaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtagg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4903828 |
gaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagctgttggaatctgttaaggtgttgtcttggagatggtttttgggtagg |
4903927 |
T |
|
| Q |
418 |
ttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtgg |
517 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903928 |
ttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtgg |
4904027 |
T |
|
| Q |
518 |
ccttctggttgttctgtagtcgtgtttctctggcttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagctgcttctt |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4904028 |
ccttctggttgttctgtagtcgtgtttctctggtttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagctgcttctt |
4904127 |
T |
|
| Q |
618 |
tagga |
622 |
Q |
| |
|
||||| |
|
|
| T |
4904128 |
tagga |
4904132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 175 - 334
Target Start/End: Original strand, 1557161 - 1557320
Alignment:
| Q |
175 |
aagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgca |
274 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||||| || || |||||||||||||||||||||||||||| ||| | || | ||||||||| | || | |
|
|
| T |
1557161 |
aagcttatggactggctggactttaattttttaatccccccaaatctgtttattatgtgggaatgttggattggagctgttgtcaataaaaagattcgga |
1557260 |
T |
|
| Q |
275 |
ggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgaca |
334 |
Q |
| |
|
||||| || | ||||||||||| | ||||||| ||||||||||| |||||||||| |
|
|
| T |
1557261 |
agggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatgaca |
1557320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 373 - 488
Target Start/End: Original strand, 1557359 - 1557474
Alignment:
| Q |
373 |
ttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtt |
472 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||| ||||||||| |||| | || ||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
1557359 |
ttggaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgtc |
1557458 |
T |
|
| Q |
473 |
tgttgcggtgatgctg |
488 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
1557459 |
tgttgcgttgaggctg |
1557474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 12123902 - 12123866
Alignment:
| Q |
313 |
atttggaaagcgaggaatgacagaattttcaacaatg |
349 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
12123902 |
atttggaaagctaggaatgacagaattttcaataatg |
12123866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 33 - 605
Target Start/End: Complemental strand, 22154014 - 22153441
Alignment:
| Q |
33 |
tagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctctctacagtgtgtttggtgcaataattcgattgaagattcatca |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| | || |
|
|
| T |
22154014 |
tagaatcccaacaaagatcaaccttgctataaggaactcgctcccaccggatagctctcttcagtgtgtttggtgcaacaattcgattaaagatttaaca |
22153915 |
T |
|
| Q |
133 |
catctttttcttcattgcgaaggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
22153914 |
catctttttcttcattgcgaaggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgc |
22153815 |
T |
|
| Q |
233 |
gggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22153814 |
gggaatgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatga |
22153715 |
T |
|
| Q |
333 |
cagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcg |
432 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
22153714 |
cataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcg |
22153615 |
T |
|
| Q |
433 |
tgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttct |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| | |
|
|
| T |
22153614 |
tgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttat |
22153515 |
T |
|
| Q |
533 |
gtagtcgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
605 |
Q |
| |
|
| ||||| |||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
22153514 |
gcagtcgcgtttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22153441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 33 - 605
Target Start/End: Complemental strand, 22209929 - 22209356
Alignment:
| Q |
33 |
tagaatcccaacaaagatcaaccttgctataagaaactcgctcccaccggatagctctctacagtgtgtttggtgcaataattcgattgaagattcatca |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| | || |
|
|
| T |
22209929 |
tagaatcccaacaaagatcaaccttgctataaggaactcgctcccaccggatagctctcttcagtgtgtttggtgcaacaattcgattaaagatttaaca |
22209830 |
T |
|
| Q |
133 |
catctttttcttcattgcgaaggggttggtaaggtctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
22209829 |
catctttttcttcattgcgaaggggttggtaaggtctggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgc |
22209730 |
T |
|
| Q |
233 |
gggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22209729 |
gggaatgttggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatga |
22209630 |
T |
|
| Q |
333 |
cagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcg |
432 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
22209629 |
cataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcg |
22209530 |
T |
|
| Q |
433 |
tgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttct |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| | |
|
|
| T |
22209529 |
tgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttat |
22209430 |
T |
|
| Q |
533 |
gtagtcgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
605 |
Q |
| |
|
| ||||| |||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
22209429 |
gcagtcgcgtttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22209356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 41450779 - 41450828
Alignment:
| Q |
200 |
attttttaattcctcctaatctgtttattatgtgggaatgttggaatggt |
249 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | ||| |||||||||||||| |
|
|
| T |
41450779 |
attttttaattcctccaaatttgtttattctttggcaatgttggaatggt |
41450828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 181 - 483
Target Start/End: Original strand, 53562135 - 53562433
Alignment:
| Q |
181 |
atggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagctgcgcaggggtg |
280 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||| || ||||| |||||| ||||||||||||||||||| | |||| ||||| ||| || | |||| |
|
|
| T |
53562135 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagacccgtaaaggtg |
53562234 |
T |
|
| Q |
281 |
gtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatc |
380 |
Q |
| |
|
|||| | ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| ||||| | |
|
|
| T |
53562235 |
ttagaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttg----c |
53562330 |
T |
|
| Q |
381 |
tgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcgg |
480 |
Q |
| |
|
|| ||||| ||||||||||||||| |||||| || || || | |||| |||||| || |||||||| |||||||| ||||| |||||| ||||| |
|
|
| T |
53562331 |
agtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcgg |
53562430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 167 - 486
Target Start/End: Complemental strand, 38185584 - 38185265
Alignment:
| Q |
167 |
tctggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaa |
266 |
Q |
| |
|
||||| || |||||||||||||| ||||||| |||||| ||||||| || ||||||||||| | |||||||||||||||| | | | ||| |||||||| |
|
|
| T |
38185584 |
tctggcgtgagcttatggagtggctggaattcaattttataattccaccgaatctgtttatcacgtgggaatgttggaattgagcggtttataataaaaa |
38185485 |
T |
|
| Q |
267 |
gctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggag |
366 |
Q |
| |
|
| | | | ||| | || | ||||||||||| || |||||||| || |||||||| |||||||| | || ||| || |||| ||| ||| ||| |
|
|
| T |
38185484 |
gatttgtaagggagtgaggcttatttggcatgccgccatttggagcatatggaaagctaggaatgatataacttttaataatgcagtgttggattgtgag |
38185385 |
T |
|
| Q |
367 |
gagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaagg |
466 |
Q |
| |
|
| ||| |||||||| ||||||||||| | |||||||||| ||| ||||| | || | || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
38185384 |
gcattgctggaatctattaaggtgttggcctggaggtggtgttttggtagaataaacttgccggcatgtttgttttacgagtggaattggaatccgaagg |
38185285 |
T |
|
| Q |
467 |
attgtttgttgcggtgatgc |
486 |
Q |
| |
|
| || ||||||||||||||| |
|
|
| T |
38185284 |
aatgcttgttgcggtgatgc |
38185265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 34821689 - 34821645
Alignment:
| Q |
18 |
gaaacttcttcatgatagaatcccaacaaagatcaaccttgctat |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34821689 |
gaaacttcttcatgatagaatcccaacaaaaatcaaccttgctat |
34821645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 349
Target Start/End: Complemental strand, 34821538 - 34821358
Alignment:
| Q |
169 |
tggagtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtgggaatgttggaatggtgagtttttgaataaaaagc |
268 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| || |||| ||||| ||| ||||||| |||||| | ||||||||||||| | || ||||||||| |
|
|
| T |
34821538 |
tggagtaagctcatggagtggttagacattaatattataatccctccgaatttgtttatcatgtggaattgttggaatggtgcggttcacaataaaaaga |
34821439 |
T |
|
| Q |
269 |
tgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatg |
349 |
Q |
| |
|
| || | ||| | || | |||||||| || || |||||||| || ||||||||||||||||| | ||||| ||||||| |
|
|
| T |
34821438 |
ttcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatg |
34821358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 43073787 - 43073753
Alignment:
| Q |
383 |
ttaaggtgttgtcttggaggtggtttttgggtagg |
417 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43073787 |
ttaaggtgttgtcttggaggtggttgttgggtagg |
43073753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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