View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18776_low_10 (Length: 479)

Name: NF18776_low_10
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18776_low_10
NF18776_low_10
[»] chr7 (4 HSPs)
chr7 (1-464)||(27117108-27117575)
chr7 (292-371)||(6084791-6084870)
chr7 (176-227)||(6084671-6084722)
chr7 (80-137)||(40143565-40143622)
[»] chr5 (2 HSPs)
chr5 (288-464)||(2307864-2308042)
chr5 (177-243)||(2307735-2307801)
[»] chr4 (4 HSPs)
chr4 (178-464)||(54205285-54205569)
chr4 (90-123)||(4404363-4404396)
chr4 (72-136)||(48084483-48084547)
chr4 (72-136)||(54997566-54997630)
[»] chr2 (2 HSPs)
chr2 (176-464)||(24600141-24600443)
chr2 (176-464)||(24613671-24613973)
[»] chr8 (6 HSPs)
chr8 (353-464)||(27812251-27812362)
chr8 (188-272)||(8832943-8833027)
chr8 (178-244)||(27812048-27812114)
chr8 (288-341)||(27812179-27812232)
chr8 (288-340)||(8833046-8833098)
chr8 (72-119)||(31012660-31012707)
[»] scaffold0175 (1 HSPs)
scaffold0175 (178-249)||(27962-28033)
[»] chr3 (3 HSPs)
chr3 (178-233)||(43207553-43207608)
chr3 (293-341)||(17650719-17650767)
chr3 (91-123)||(47914138-47914170)
[»] chr1 (3 HSPs)
chr1 (76-121)||(26768973-26769018)
chr1 (182-255)||(50845758-50845831)
chr1 (76-136)||(10776155-10776215)
[»] chr6 (1 HSPs)
chr6 (76-136)||(11180386-11180446)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 27117575 - 27117108
Alignment:
Q  1 aaactatcccttaaaaagaaagggtcaaaccatcaaattcaaggaaaattatcttcgaacaactatacttctttatgtttatctattttcaaattacatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  27117575 aaactatcccttaaaaagaaagggtcaaaccatcaaattcaaggaaaattatcttcgaacaactatactcccttatgtttatctcttttcaaattacatc 27117476  T
Q  101 ttcaatttatttttataaatggatgagatctttacctaatgattcgatggcttagtttgaagttcttcgattaatatctctgaagcacgggtactccaat 200  Q
    ||| |||||||||||||||||||   |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27117475 ttccatttatttttataaatggagaggatctttacctactgattcgatggcttagtttgaaattcttcgattaatatctctgaagcacgggtactccaat 27117376  T
Q  201 ttgcaaaacgtacccataccaggtactccgcggatactggtactagtactgtacgcacccatgatgtaccaa----nnnnnnnnnnnnnnnaaaccttgg 296  Q
    ||||||||||||||| |||| ||||||||| ||||||| ||||| ||||||||| |||||||||||||||||                   |||||||||    
T  27117375 ttgcaaaacgtacccgtaccgggtactccgtggatactagtactcgtactgtacacacccatgatgtaccaatttttttttttttgtttttaaaccttgg 27117276  T
Q  297 tacggttacggtacggcggtggtactcttagagtacgcataaccgnnnnnnncttgagaaaatgaggtttttcatttaaaattaaatgtgaaggaaaagg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27117275 tacggttacggtacggcggtggtactcttagagtacgcataaccgtttttttcttgagaaaatgaggtttttcatttaaaattaaatgtgaaggaaaagg 27117176  T
Q  397 aaataatgcaacctgaaactgcaactattgcaatatatcatacaagggttcttattttagaataagat 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27117175 aaataatgcaacctgaaactgcaactattgcaatatatcatacaagggttcttattttagaataagat 27117108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 6084791 - 6084870
Alignment:
Q  292 cttggtacggttacggtacggcggtggtactcttagagtacgcataaccgnnnnnnncttgagaaaatgaggtttttcat 371  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||        ||||||||||||||| |||||||    
T  6084791 cttggtacggttacggtacggcggtggtactctcagggtacgcataaccatttttttcttgagaaaatgaggcttttcat 6084870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 6084671 - 6084722
Alignment:
Q  176 atctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtact 227  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  6084671 atctctgaagcacgggtactccaatttgcaaaacgtacctgtaccgggtact 6084722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 40143565 - 40143622
Alignment:
Q  80 tatctattttcaaattacatcttcaatttatttttataaatggatgagatctttacct 137  Q
    ||||| ||| ||||||| |||||| |||||||||||||||||||   |||||||||||    
T  40143565 tatctctttccaaattatatcttccatttatttttataaatggagaggatctttacct 40143622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 288 - 464
Target Start/End: Original strand, 2307864 - 2308042
Alignment:
Q  288 aaaccttggtacggttacggtacggcggtggtactcttagagtacgcataaccgnnnnnnn--cttgagaaaatgaggtttttcatttaaaattaaatgt 385  Q
    |||||||||||||||||||||||||| |||||||||| || ||| |||||||||         |||||||||||||||||||||||||||||||||||||    
T  2307864 aaaccttggtacggttacggtacggcagtggtactctcagggtaggcataaccgtttatttttcttgagaaaatgaggtttttcatttaaaattaaatgt 2307963  T
Q  386 gaaggaaaaggaaataatgcaacctgaaactgcaactattgcaatatatcatacaagggttcttattttagaataagat 464  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2307964 gaaggaaaaggaaataatgcaacctggaactgcaactattgcaatatatcatacaagggttcttattttagaataagat 2308042  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 2307735 - 2307801
Alignment:
Q  177 tctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtac 243  Q
    |||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  2307735 tctctgaaacaccggtactccaatttgcaaaacgtacccgtaccgggtactccgcgggtactggtac 2307801  T

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Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 178 - 464
Target Start/End: Complemental strand, 54205569 - 54205285
Alignment:
Q  178 ctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatact-----ggtactagtactgtacgcacccatgatgtaccaa 272  Q
    |||||||||||||||||||||||||||||||||||||| |||| || | | || |  ||||     |||||| |||||||||||||||||||||||||||    
T  54205569 ctctgaagcacgggtactccaatttgcaaaacgtacccgtaccggg-agtacggg--tactccatgggtactggtactgtacgcacccatgatgtaccaa 54205473  T
Q  273 nnnnnnnnnnnnnnnaaaccttggtacggttacggtacggcggtggtactcttagagtacgcataaccgnnnnnnncttgagaaaatgaggtttttcatt 372  Q
                   ||||||||||||||||||||||||||||||||||||| || ||||||||||||        ||||||||||| ||||||||||||    
T  54205472 tttttttttt-----aaaccttggtacggttacggtacggcggtggtactctcagggtacgcataaccatttttttcttgagaaaataaggtttttcatt 54205378  T
Q  373 t-aaaattaaatgtgaaggaaaaggaaataatgc-aacctgaaactgcaactattgcaatatatcatacaagggttcttattttagaataagat 464  Q
    | |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  54205377 tcaaaattaaatgtgaaggaaaaggaaataatgcaaacctggaactgcaactatcgcaatatat-atacaagggttcttattttagaataagat 54205285  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 4404363 - 4404396
Alignment:
Q  90 caaattacatcttcaatttatttttataaatgga 123  Q
    |||||||||||||| |||||||||||||||||||    
T  4404363 caaattacatcttccatttatttttataaatgga 4404396  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 48084547 - 48084483
Alignment:
Q  72 tttatgtttatctattttcaaattacatcttcaatttatttttataaatggatgagatctttacc 136  Q
    ||||||| ||||| ||  ||||| |||||||| |||||||||||||||||||   ||||||||||    
T  48084547 tttatgtctatctcttcccaaatgacatcttccatttatttttataaatggagaggatctttacc 48084483  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 54997630 - 54997566
Alignment:
Q  72 tttatgtttatctattttcaaattacatcttcaatttatttttataaatggatgagatctttacc 136  Q
    ||||||| ||||| ||| |||||| || |||| |||||||||||||||||||   ||||||||||    
T  54997630 tttatgtctatctctttccaaattgcaacttccatttatttttataaatggagaggatctttacc 54997566  T

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Target: chr2 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 24600141 - 24600443
Alignment:
Q  176 atctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtac--------ta---gtactgtacgcacccatga 264  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||        ||   |||||||||||||||||||    
T  24600141 atctctgaagcacgggtactccaatttgcaaaacgtacccgtaccgggtactccgcgg-tactggtacgcatatggtacacgtactgtacgcacccatga 24600239  T
Q  265 tgtaccaannnnnnnnnnnnnnn---aaaccttggtacggttacggtacggcggtggtactcttagagtacgcataaccgnnnnnnnct--tgagaaaat 359  Q
    ||||||||                  |||||||||||| |||||||||||||| ||||||||| |  ||||||||||||         |  |||||||||    
T  24600240 tgtaccaatttattttattttttttaaaaccttggtacagttacggtacggcgatggtactctcacggtacgcataaccttttttttttgttgagaaaat 24600339  T
Q  360 gaggtttttcatttaaaattaaatgtgaaggaaaaggaaataatgcaacctgaaactgcaactattgcaatatatcatacaagggttcttattttagaat 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  24600340 gaggtttttcatttaaaattaaatgtgaaggaaaaggaaataatgcaacctggaactgcaattattgcaatatatcatacaaggg-tcttattttagaat 24600438  T
Q  460 aagat 464  Q
    |||||    
T  24600439 aagat 24600443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 24613973 - 24613671
Alignment:
Q  176 atctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtac--------ta---gtactgtacgcacccatga 264  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||        ||   |||||||||||||||||||    
T  24613973 atctctgaagcacgggtactccaatttgcaaaacgtacccgtaccgggtactccgcgg-tactggtacgcatatggtacacgtactgtacgcacccatga 24613875  T
Q  265 tgtaccaannnnnnnnnnnnnnn---aaaccttggtacggttacggtacggcggtggtactcttagagtacgcataaccgnnnnnnnct--tgagaaaat 359  Q
    ||||||||                  |||||||||||| |||||||||||||| ||||||||| |  ||||||||||||         |  |||||||||    
T  24613874 tgtaccaatttattttattttttttaaaaccttggtacagttacggtacggcgatggtactctcacggtacgcataaccttttttttttgttgagaaaat 24613775  T
Q  360 gaggtttttcatttaaaattaaatgtgaaggaaaaggaaataatgcaacctgaaactgcaactattgcaatatatcatacaagggttcttattttagaat 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  24613774 gaggtttttcatttaaaattaaatgtgaaggaaaaggaaataatgcaacctggaactgcaattattgcaatatatcatacaaggg-tcttattttagaat 24613676  T
Q  460 aagat 464  Q
    |||||    
T  24613675 aagat 24613671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 353 - 464
Target Start/End: Original strand, 27812251 - 27812362
Alignment:
Q  353 agaaaatgaggtttttcatttaaaattaaatgtgaaggaaaaggaaataatgcaacctgaaactgcaactattgcaatatatcatacaagggttcttatt 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  27812251 agaaaatgaggtttttcatttaaaattaaatgtgaaggaaaaggaaataatgcaacctggaactgcaactatcgcaatatatcatacaagggttcttatt 27812350  T
Q  453 ttagaataagat 464  Q
    ||| ||||||||    
T  27812351 ttaaaataagat 27812362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 8832943 - 8833027
Alignment:
Q  188 cgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtactagtactgtacgcacccatgatgtaccaa 272  Q
    |||||||||||||||||||||||||||  |||| |||||||||| | |||||||||| |||| ||||||||||||||||||||||    
T  8832943 cgggtactccaatttgcaaaacgtacctgtaccgggtactccgcaggtactggtactcgtacagtacgcacccatgatgtaccaa 8833027  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 27812048 - 27812114
Alignment:
Q  178 ctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtact 244  Q
    |||||||||| |||||||||||| |||||||||||||| |||| |||| ||||  | ||||||||||    
T  27812048 ctctgaagcatgggtactccaatctgcaaaacgtacccgtaccgggtattccgtaggtactggtact 27812114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 27812179 - 27812232
Alignment:
Q  288 aaaccttggtacggttacggtacggcggtggtactcttagagtacgcataaccg 341  Q
    |||||||||||||||||||||||| | |||||||||| || |||| ||||||||    
T  27812179 aaaccttggtacggttacggtacgacagtggtactctcagggtacacataaccg 27812232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 8833046 - 8833098
Alignment:
Q  288 aaaccttggtacggttacggtacggcggtggtactcttagagtacgcataacc 340  Q
    |||| ||| ||||||||||||||||||||||| |||| || ||||||||||||    
T  8833046 aaactttgatacggttacggtacggcggtggtgctctcagggtacgcataacc 8833098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 31012660 - 31012707
Alignment:
Q  72 tttatgtttatctattttcaaattacatcttcaatttatttttataaa 119  Q
    ||||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  31012660 tttatgtctatctcttttcaaattacaacttcaatttttttttataaa 31012707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 28033 - 27962
Alignment:
Q  178 ctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtactagtac 249  Q
    |||||||||||||||||||||||||||||||||||||| |||| || ||| ||||| |||||||||| ||||    
T  28033 ctctgaagcacgggtactccaatttgcaaaacgtacccgtaccgggcacttcgcgggtactggtactcgtac 27962  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 43207553 - 43207608
Alignment:
Q  178 ctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcgg 233  Q
    |||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||    
T  43207553 ctctgaagcacgggtacttcaatttgcaaaatgtacccgtaccgggtactccgcgg 43207608  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 17650719 - 17650767
Alignment:
Q  293 ttggtacggttacggtacggcggtggtactcttagagtacgcataaccg 341  Q
    ||||||| |||||| ||||||||||||||||| || ||| |||||||||    
T  17650719 ttggtacagttacgttacggcggtggtactctcagggtatgcataaccg 17650767  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 47914170 - 47914138
Alignment:
Q  91 aaattacatcttcaatttatttttataaatgga 123  Q
    ||||||||||||| |||||||||||||||||||    
T  47914170 aaattacatcttctatttatttttataaatgga 47914138  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 26768973 - 26769018
Alignment:
Q  76 tgtttatctattttcaaattacatcttcaatttatttttataaatg 121  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  26768973 tgtttatctcttttcaaattacattttcaatttatttttataaatg 26769018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 50845758 - 50845831
Alignment:
Q  182 gaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtactagtactgtacg 255  Q
    |||||||  ||||||||||||||||||||| ||| |||| ||||||  |||| |||||||||| |||| |||||    
T  50845758 gaagcacctgtactccaatttgcaaaacgtgcccgtaccgggtactttgcgggtactggtactcgtacggtacg 50845831  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 10776155 - 10776215
Alignment:
Q  76 tgtttatctattttcaaattacatcttcaatttatttttataaatggatgagatctttacc 136  Q
    ||||||||| |||| ||||| ||||||| |||||||||||||||||||   ||||||||||    
T  10776155 tgtttatctctttttaaattgcatcttccatttatttttataaatggagaggatctttacc 10776215  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 11180446 - 11180386
Alignment:
Q  76 tgtttatctattttcaaattacatcttcaatttatttttataaatggatgagatctttacc 136  Q
    ||||||||| ||||||||||  |||||| |||| |||||||||||||| | ||||||||||    
T  11180446 tgtttatctcttttcaaattgtatcttctatttctttttataaatggaggggatctttacc 11180386  T

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