View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_14 (Length: 419)
Name: NF18776_low_14
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 63 - 402
Target Start/End: Complemental strand, 46039558 - 46039217
Alignment:
| Q |
63 |
tttatgtcccattttcatagtgttgaatatataattttgacaaaattgatattaagcctgtaccgaggtgttttgtgggttattttctggtcaannnnnn |
162 |
Q |
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| T |
46039558 |
tttatgtcccattttcatagtgttgaatatataattttgacaaaattgatattaagcctgtaccgaggtgttttgtgggttattttctggt--------- |
46039468 |
T |
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| Q |
163 |
nggttaattttgtgaccgatgtttagatgaaaagctactt----------ccactgtttatgatttagatgaaaatttctaaactctttagtgaatttta |
252 |
Q |
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| T |
46039467 |
tggttaattttgtgaccgatgtttagatgaaaagctacttatactaatttccactgtttatgatttagatgaaaatttctaaactctttagtgaatttta |
46039368 |
T |
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| Q |
253 |
taatgaagtttagctgtaaatctaagctgtaaaa-ttcacactttgtcttttgcacaattgatctcgcgacaaaataacttattttttcctagactgtat |
351 |
Q |
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| T |
46039367 |
taatgaagtttagctgttacactaagctgtaaaaattcacactttgtcttttgcacaattgatctcgcgacaaaataacttattttttcctagactgtat |
46039268 |
T |
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| Q |
352 |
tatgaaagcaacacaactcatgatacttcatgcatgcgtctagctcatcca |
402 |
Q |
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| T |
46039267 |
tatgaaagcaacacaactcatgatacttcatgcatgcgtctagctcatcca |
46039217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 46039639 - 46039574
Alignment:
| Q |
1 |
atgtgaaaaatttagggttagaacacacattccgcaaataatgaaatgtagataacaattgattta |
66 |
Q |
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| T |
46039639 |
atgtgaaaaatttagagttagaacccacatcccgtatataatgcaatatagataacaattgattta |
46039574 |
T |
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