View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_16 (Length: 393)
Name: NF18776_low_16
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 22 - 379
Target Start/End: Complemental strand, 42453190 - 42452833
Alignment:
| Q |
22 |
tagaagggctagtaaacttgaaagacaattgaatttcccccatcttcttcagcccagaaggttgaagttgaacaagaggataagaataattgtaaacggt |
121 |
Q |
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| T |
42453190 |
tagaagggctagtaaacttgaaagacaattgaatttcccccatcttcttcagcccagaaggttgaagttgaacaagaggataagaataattgtaaacggt |
42453091 |
T |
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| Q |
122 |
gttgatttccatttctgatagactgattctcaccttccctatccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaac |
221 |
Q |
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| T |
42453090 |
gttgatttccatttctgatagactgattctcaccttccctatccttgtatcgtttgctccagcagctatatattcttcatgtaattgactattatcaaac |
42452991 |
T |
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| Q |
222 |
acagaaataatgaaaaatgtagatggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaaccc |
321 |
Q |
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| T |
42452990 |
acagaaataatgaaaaatgtagatggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaaccc |
42452891 |
T |
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| Q |
322 |
attttgagccatatttagctacacaataggcatcggtgcgaccttgaggtttcatctc |
379 |
Q |
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| T |
42452890 |
attttgagccatatttagctacacaataggcatcggtgcgaccttgaggtttcatctc |
42452833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 27253643 - 27253755
Alignment:
| Q |
246 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
345 |
Q |
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| T |
27253643 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagactatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
27253742 |
T |
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| Q |
346 |
aataggcatcggt |
358 |
Q |
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|||| || ||||| |
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| T |
27253743 |
aatatgcgtcggt |
27253755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 21197801 - 21197913
Alignment:
| Q |
246 |
ggatcatagaccttccaagagtattgctcattccactttggagaaagactattaacaacagttcttgaccgaacccattttgagccatatttagctacac |
345 |
Q |
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|||||||| || | ||||| ||||||||||||||| |||| |||||| ||| ||||| ||| |||| | |||||||| || ||||| |||||||||| |
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| T |
21197801 |
ggatcataaacttcccaagtatattgctcattccaccttggtgaaagaatatcaacaatagtccttgttctcacccatttagaaccatacttagctacac |
21197900 |
T |
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| Q |
346 |
aataggcatcggt |
358 |
Q |
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|||| || ||||| |
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| T |
21197901 |
aatatgcgtcggt |
21197913 |
T |
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