View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_17 (Length: 389)
Name: NF18776_low_17
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 47053199 - 47052842
Alignment:
| Q |
19 |
atgttacgtacgaatcaggggcgcagatttggagattgtatagatttgtgtcaaggagagctttaaccaaagctctgaggccaggtgcatcgattccatc |
118 |
Q |
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| T |
47053199 |
atgttacgtacgaatcaggggcgcagatttggagattgtatagatttgtgtcaaggagagctttaaccaaagctctgaggccaggtgcatcgattccatc |
47053100 |
T |
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| Q |
119 |
atcgtttgtgatcatgatcgttcctctgttattcttaccttcctccattttgcttgaatgcgaattaccctttcgatgaatgaatgaatgaatgactaga |
218 |
Q |
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| T |
47053099 |
atcgtttgtgatcatgatcgttcctctgttattcttaccttcctccattttgcttgaatacgaattaccctttcgatgaatgaatga----atgactaga |
47053004 |
T |
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| Q |
219 |
ctagatagagagacaaagattgggagttagttaggaattgaaaattgaaatatactactgtacgaatatggcgctatgtctttaagctaatattcccttc |
318 |
Q |
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| T |
47053003 |
ctagctagagagacaaagattgggagttagttaggaattgaaaattgaaatatactactgtacgaatatggcgttatgtctttaagctaatattcccttc |
47052904 |
T |
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| Q |
319 |
caccaattaattaatttcttt--cacttcactgcttcaataataatctacaaaattacctat |
378 |
Q |
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| T |
47052903 |
caccaattaattaatttctttcacacttcactgcttcaataataatctacaaaattacctat |
47052842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 47061686 - 47061641
Alignment:
| Q |
30 |
gaatcaggggcgcagatttggagattgtatagatttgtgtcaagga |
75 |
Q |
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| T |
47061686 |
gaatcaggggcgcagacttggagattgtatagattggtggcaagga |
47061641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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