View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_18 (Length: 381)
Name: NF18776_low_18
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 36839557 - 36839202
Alignment:
| Q |
11 |
aaaatcggtttttgacaaattcgtaatgggcccattatacggacagcaagaatactctatgatctcctagccattaaatattcacnnnnnnncaaattga |
110 |
Q |
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| T |
36839557 |
aaaatcggtttttgacaaattcgtaatgggcccattatacagacagcaagaatactctatgatctcctagccattaaatattcacaaaaaaacaaattga |
36839458 |
T |
|
| Q |
111 |
ttgtgattataatttgagataatcctggaaaagacttcacatgccagcttagattccatcaaacagtgattccatattataaagttagtacactttggat |
210 |
Q |
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| T |
36839457 |
ttgtgattataatttgagataatcctggaaaagacttcacatgccagcttagattccatcaaacagtgattccatattataaagttagtacactttggat |
36839358 |
T |
|
| Q |
211 |
atatgcacatacagctgaagattgtagaggattttcacacagaaatgtcaaatatgctctcaagaaagaaaacagtctccaatcaagatcaataatagag |
310 |
Q |
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| T |
36839357 |
atatgcacatacagctgaagattgtagaggattttcacacagaaatgtcaaatatgctctcaagaaagaaaacagtctccaatcaagatcaataatagac |
36839258 |
T |
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| Q |
311 |
caaaaaatgacatgataacataataatgatatcgaaaaagctacgatcgtaaaatt |
366 |
Q |
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| T |
36839257 |
caaaaaatgacatgataacataataatgatatcgaaaaagctacgatcgtaaaatt |
36839202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 38 - 365
Target Start/End: Original strand, 12078391 - 12078716
Alignment:
| Q |
38 |
gggcccattatacggacagcaagaatactctatgatctcctagccattaaatattcacnnnnnnn-caaattgattgtgattataatttgagataatcct |
136 |
Q |
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| T |
12078391 |
gggcccattatacagacaataagaatactctatgatctcctagccattaaatattcacaaaaaaatcaaattgattgttattataatttgagataaccct |
12078490 |
T |
|
| Q |
137 |
ggaaaagacttcacatgccagcttagattccatcaaacagtgattccatattataaagttagtacactttggatatatgcacatacagctgaagattgta |
236 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
12078491 |
ggaaaagacttcacatgacagcttagattccatcaaacagtgattccatattataaagttagtacactttggatctatgcacatacagctgaagatcata |
12078590 |
T |
|
| Q |
237 |
gaggattttcacacagaaatgtcaaatatgctctcaagaaagaaaacagtctccaatcaagatcaataatagagcaaaaaatgacatgataacataataa |
336 |
Q |
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||||| ||||||| |||||| ||||||||| |||||||||||| ||| | |||||||| ||||| ||||||| |||||||| | ||||||||||||||| |
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| T |
12078591 |
gagga-tttcacaaagaaatttcaaatatg--ctcaagaaagaatacaatatccaatcaggatcagtaatagaccaaaaaattatatgataacataataa |
12078687 |
T |
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| Q |
337 |
tgatatcgaaaaagctacgatcgtaaaat |
365 |
Q |
| |
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||||||| |||||||||||||| |||||| |
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| T |
12078688 |
tgatatccaaaaagctacgatcataaaat |
12078716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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