View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_19 (Length: 380)
Name: NF18776_low_19
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 43538884 - 43538523
Alignment:
| Q |
1 |
gggtgtaatgtgttatactatgatttatggttaaacgtcgnnnnnnnncttctttttctgagaggtggttagacattgttgttgctcagtaattgaacac |
100 |
Q |
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| T |
43538884 |
gggtgtaatgtgttatactatgatttatggttaaacgtcgttttttttcttctttttctgagaggtggttagacattgttgttgctcagtaattgaacac |
43538785 |
T |
|
| Q |
101 |
atcaaattataaaccattcctaatgttaactcttttcaatttctccctgtgcattacatgggttcataagactagcaagattaatactccaagatatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43538784 |
atcaaattataaaccattcctaatgttaactcttttcaatttctccctgtgcattacatgggttcataagactagcaagattaatactccaagatatcaa |
43538685 |
T |
|
| Q |
201 |
ccacctatttcgaaattgattttctatactcgttatatcatgctggcctttaattagtcagtatcttgatttgtgataaagatagtaacctaccagtaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43538684 |
ccacctatttcgaaattgattttctatactcgttatatcatgctggcctttaattagtcagtatcttgatttgtgataaagatagtaacctaccagtaaa |
43538585 |
T |
|
| Q |
301 |
atctggccaggcattgacattaatggaagaatttgggatcaagccagatgtagtgacgtata |
362 |
Q |
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| T |
43538584 |
atctggccaggcattgacattaatggaagaatttgggatcaagccagatgtagtgacgtata |
43538523 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 35045642 - 35045605
Alignment:
| Q |
76 |
ttgttgttgctcagtaattgaacacatcaaattataaa |
113 |
Q |
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| T |
35045642 |
ttgttgttgctcaataattgaacacaacaaattataaa |
35045605 |
T |
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