View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18776_low_22 (Length: 378)
Name: NF18776_low_22
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 4327262 - 4327612
Alignment:
| Q |
10 |
attatactttaaagtacacatctgtagtagctttgatgatcatcattttaaactgcagtcctaaatagatgatagagtataaaagtttgaggtaccaaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4327262 |
attatactttaaagtacacatctgtagtagctttgatgatcatcattttaaactgcagtcctaaatagatgatagagtataaaagtttgaggtaccaaaa |
4327361 |
T |
|
| Q |
110 |
taatagcacagccacaattgtgatcacatcagtcacatttaagtgtgatttttcatattatcaaacatcgcaacatgcgacaacaaagactatgatcaca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4327362 |
taatagcacagccacaattgtgatcacatcagtcacatttaagtgtgatttttcatattatcaaacatcgcaacatgcgacaacaaagactatgatcaca |
4327461 |
T |
|
| Q |
210 |
gtttaaaatctcgatgatgatacgcgtgcgtgtgtcttcgctacaaacataagatttaaggaaattctgtaattcagcagacatggcaacttagtcacca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4327462 |
gtttaaaatctcgatgatgatacgcgtgcgtgtgtcttcgctacaaacataagatttaaggaaattctgtaattcagcagacatggcaacttagtcacca |
4327561 |
T |
|
| Q |
310 |
atattatcagctgtatttcatggccaagaaaagcagcttgatgtatcagat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4327562 |
atattatcagctgtatttcatggccaagaaaagcagcttgatgtatcagat |
4327612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University