View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18776_low_25 (Length: 341)

Name: NF18776_low_25
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18776_low_25
NF18776_low_25
[»] chr2 (2 HSPs)
chr2 (1-326)||(25290596-25290922)
chr2 (61-149)||(19251002-19251089)
[»] chr3 (3 HSPs)
chr3 (42-149)||(9443534-9443641)
chr3 (96-154)||(744434-744492)
chr3 (96-154)||(748364-748422)
[»] chr8 (2 HSPs)
chr8 (42-149)||(4282264-4282372)
chr8 (45-123)||(25187880-25187958)
[»] chr4 (1 HSPs)
chr4 (1-165)||(19724198-19724362)
[»] chr6 (1 HSPs)
chr6 (42-149)||(7859337-7859443)
[»] chr5 (2 HSPs)
chr5 (58-149)||(15063000-15063091)
chr5 (42-149)||(28800958-28801065)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 25290596 - 25290922
Alignment:
Q  1 ttattttcaataatggtgtgatggatatagatattttcattgagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtg 100  Q
    |||||||||||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25290596 ttattttcaataatggtgtggtgaatgtagatattttcattgagaagatcaagattctagcttggtattggagtatgagtaagttaaaaatcggctcgtg 25290695  T
Q  101 tttgtattatgagtggagttggaaccctcgggagtgcttacttagatagtttttccggtgtttt-tacctttggagctgttattataagactgctgtgtt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  25290696 tttgtattatgagtggagttggaaccctcgggagtgcttacttagatagtttttccggtgttttttacctttggagctgttattataagactgttgtgtt 25290795  T
Q  200 gtctttcagtgctgctgttttttctgtttttggctgcgttatgctcctgacagttttgctagtggtgcggtctgtgttgcggctgcgcagcagggctagt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25290796 gtctttcagtgctgctgttttttctgtttttggctgcgttatgctcctgacagttttgctagtggtgcggtctgtgttgcggctgggcagcagggctagt 25290895  T
Q  300 gtggctgttttagactggtgttggttt 326  Q
    |||||||||||||||||||||||||||    
T  25290896 gtggctgttttagactggtgttggttt 25290922  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 19251089 - 19251002
Alignment:
Q  61 cttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag 149  Q
    |||||| || ||||||||||||||| |||| |  |  ||||||||||||| ||||| ||| |||||||||| | |||||||||||||||    
T  19251089 cttggttttggagtatgagtaagttgaaaa-catcatgtgtttgtattataagtggtgttagaaccctcggtaatgcttacttagatag 19251002  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 9443641 - 9443534
Alignment:
Q  42 gagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttac 141  Q
    |||||||||||| | ||||||||||||| ||||||||||||| ||||||| |   |||| |||| |||||||||| ||||||||||||||||||||||||    
T  9443641 gagaatatcaaggtcctagcttggtattggagtatgagtaagctaaaaatagcgacgtgcttgtcttatgagtggtgttggaaccctcgggagtgcttac 9443542  T
Q  142 ttagatag 149  Q
    || |||||    
T  9443541 ttcgatag 9443534  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 744492 - 744434
Alignment:
Q  96 tcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagttttt 154  Q
    |||||||||||||| |||||| ||||||||||||| || | |||| |||||||| ||||    
T  744492 tcgtgtttgtattacgagtggtgttggaaccctcgagaatacttaattagatagctttt 744434  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 748422 - 748364
Alignment:
Q  96 tcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagttttt 154  Q
    |||||||||||||| |||||| ||||||||||||| || | |||| |||||||| ||||    
T  748422 tcgtgtttgtattacgagtggtgttggaaccctcgagaatacttaattagataggtttt 748364  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 4282264 - 4282372
Alignment:
Q  42 gagaatatcaagattctagcttggtattagagtatgagtaagtt-aaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgctta 140  Q
    |||||||| ||| ||||||||||||||| ||||||||||||| | |||||| |   | |||||||||||||||||| |||||||||||||||| || |||    
T  4282264 gagaatataaaggttctagcttggtattggagtatgagtaagctgaaaaatagcgacatgtttgtattatgagtggtgttggaaccctcgggattgttta 4282363  T
Q  141 cttagatag 149  Q
    || ||||||    
T  4282364 ctaagatag 4282372  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 25187958 - 25187880
Alignment:
Q  45 aatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttgga 123  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||| |  | ||| ||||||||||||||| ||||||    
T  25187958 aatatcaagatgttagcttggtattggagtatgagtaagttaaaaatagcattgtgcttgtattatgagtggtgttgga 25187880  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 19724362 - 19724198
Alignment:
Q  1 ttattttcaataatggtgtgatggatatagatattttcattgagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtg 100  Q
    |||||||||||||||||||| | ||  ||||    || ||||||||||||||| |  |||||||||||| |||||||||||    |||||| |  || ||    
T  19724362 ttattttcaataatggtgtgcttgaggtagaagaattgattgagaatatcaaggtgttagcttggtattggagtatgagtagacaaaaaatggtatcatg 19724263  T
Q  101 tttgtattatgagtggagttggaaccctcgggagtgcttacttagatagtttttccggtgttttt 165  Q
    ||||||||| |||| | |||||||||||| |||||| |||||||||||||| ||  |||||||||    
T  19724262 tttgtattaagagttgtgttggaaccctcaggagtgtttacttagatagttgttatggtgttttt 19724198  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 7859337 - 7859443
Alignment:
Q  42 gagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttac 141  Q
    |||||||||||| |||| |||||||||| ||||||||||||| | | ||| |   |||||||||||||||||||| ||| |||  || |||| || ||||    
T  7859337 gagaatatcaaggttcttgcttggtattggagtatgagtaagctgataatagcgacgtgtttgtattatgagtggtgttcgaattcttgggattg-ttac 7859435  T
Q  142 ttagatag 149  Q
    ||||||||    
T  7859436 ttagatag 7859443  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 15063091 - 15063000
Alignment:
Q  58 tagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag 149  Q
    |||||||||||| ||||||||||| |  |||||     |||||||||||||| |||||| ||||||||||||||||| |  |||||||||||    
T  15063091 tagcttggtattggagtatgagtaggcgaaaaacgatatcgtgtttgtattacgagtggcgttggaaccctcgggagcgtctacttagatag 15063000  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 28800958 - 28801065
Alignment:
Q  42 gagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttac 141  Q
    |||||||||||| ||||||||||||||| ||||||||| ||  | ||||| |  || |||| ||||||||| ||| |||||||||||  | | || ||||    
T  28800958 gagaatatcaaggttctagcttggtattggagtatgagcaaacttaaaatagcatcatgttcgtattatgattggtgttggaacccttagaattgtttac 28801057  T
Q  142 ttagatag 149  Q
    ||||||||    
T  28801058 ttagatag 28801065  T

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