View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_28 (Length: 323)
Name: NF18776_low_28
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 37530498 - 37530204
Alignment:
| Q |
12 |
acagaacctcaactaattaaactattctctaccaaaaattgcatgataaccacccctcctatgttcagttacaacaagtgtactactttctttagctttt |
111 |
Q |
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| T |
37530498 |
acagaacctcaactaattaaactattctctaccaaaaattgcatgataaccacccctcctatgttcagttacaacaagtgtactactttctttagctttt |
37530399 |
T |
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| Q |
112 |
gttgccatatatgattaggtatttaagctaagaaattctggaaagaatctgcacactgcatataccaatttcttttttgaagtatcaacgagtgatattt |
211 |
Q |
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| T |
37530398 |
gttgccatatatgattaggtatttaagctaagaaattctgaaaagaatctgcacactgcatatactaatttcttttttgaagtatcaacgagtgatattt |
37530299 |
T |
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| Q |
212 |
tctactgctatttaaaacaaaaactcttactgaaaccagttaatgagaagcagcgatcaattgatgatgatgaaggtcacttaatctgtagctta |
306 |
Q |
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| T |
37530298 |
tctactgctatttaaaacaaaaactcttactgaaaccagttaatgagaagcagcgatcaattgatgatgatgaaggtcacttaatctgtagctta |
37530204 |
T |
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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 1423700 - 1423790
Alignment:
| Q |
83 |
caacaagtgtactactttctttagcttttgttgccatatatgattaggtatttaagc--taagaaattctggaaagaatctgcacactgca |
171 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||| |
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| T |
1423700 |
caacaagtgtactactttctttagtttttgttgccatatataattaggtatttaagctataagaaattcttgatagaatctgcacactgca |
1423790 |
T |
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