View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_3 (Length: 613)
Name: NF18776_low_3
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_3 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 366 - 612
Target Start/End: Original strand, 11748978 - 11749224
Alignment:
| Q |
366 |
tttactaccaccatagcaataaaaatttcatggaaatacctctaatgtggaagagtccaacactccaaaatatgcagtgaattcttcctgtgtcaaccag |
465 |
Q |
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| T |
11748978 |
tttactaccaccatagcaataaaaatttcatggacatacctctaccgtggaagtgtccaacactccaaaatatgcagtgaattcttcctatgtcaaccag |
11749077 |
T |
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| Q |
466 |
gagcagtctttaagccaaacatgagtaggagacccacttagaagtacttcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcc |
565 |
Q |
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| T |
11749078 |
gagcagtctttaagccaaacatgagtaggagacccacttagaagtacttcaagaaagcgagcattcatttttcctgaatcgcaaagcaacgcacaaagcc |
11749177 |
T |
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| Q |
566 |
tttgtttgaactcatccggaataccatcaagggaaaccaatccatca |
612 |
Q |
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| T |
11749178 |
tttgtttgaactcatccggaataccatcaagggaaaccaatccatca |
11749224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 401 - 613
Target Start/End: Original strand, 52011204 - 52011416
Alignment:
| Q |
401 |
atacctctaatgtggaagagtccaacactccaaaatatgcagtgaattcttcctgtgtcaaccaggagcagtctttaagccaaacatgagtaggagaccc |
500 |
Q |
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| T |
52011204 |
atacctctaatatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatctttaagccgaatatgagtaggaaaccc |
52011303 |
T |
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| Q |
501 |
acttagaagtacttcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaa |
600 |
Q |
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| T |
52011304 |
actcagaagtagttcaagaaagcgacaattcatttttctcgaatcacataccaacgcgctaagcctttgtttgagctcatccgaaacaccatcaagcgaa |
52011403 |
T |
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| Q |
601 |
accaatccatcag |
613 |
Q |
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| T |
52011404 |
accattccatcag |
52011416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 52010863 - 52010960
Alignment:
| Q |
14 |
atcaatttagacaagcagcttgctgactttgccaatgtagaaagtaacgtatcgtcagttataactcgtccacattggtcaagttgtagcacctattc |
111 |
Q |
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| T |
52010863 |
atcaatctagacaagcagcttggtgactttgccaatgtagaaagtaatgtatattctgttataactcgtccacactggtcaagttgcagcacctattc |
52010960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 401 - 572
Target Start/End: Original strand, 52001339 - 52001510
Alignment:
| Q |
401 |
atacctctaatgtggaagagtccaacactccaaaatatgcagtgaattcttcctgtgtcaaccaggagcagtctttaagccaaacatgagtaggagaccc |
500 |
Q |
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| T |
52001339 |
atacctctaatatggaattgtccaactttccaaaatattttgtaaattcttcctctgtcatccaagagcaatctttaagccgaatcacatttggaaatcc |
52001438 |
T |
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| Q |
501 |
acttagaagtacttcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgttt |
572 |
Q |
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| T |
52001439 |
acttagaagtagttcaagagagtgagcattcatttttcttgaatcacaaagcaacgcgctaagcctttgttt |
52001510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 51998299 - 51998433
Alignment:
| Q |
14 |
atcaatttagacaagcagcttgctgactttgccaatgtagaaagtaacgtatcgtcagttataactcgtccacattggtcaagttgtagcacctattcga |
113 |
Q |
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| T |
51998299 |
atcaatctagacaagcagtttggtgactttgccaatgtacaaggtaatgtatattcagttataattcgtccacattgctgaagttgcagaacctattcca |
51998398 |
T |
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| Q |
114 |
cnnnnnnntgtacaaacatgtattaagatcttgta |
148 |
Q |
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| T |
51998399 |
caaataaatgtataaacatgaattaagatcttgta |
51998433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 52000909 - 52000945
Alignment:
| Q |
74 |
ataactcgtccacattggtcaagttgtagcacctatt |
110 |
Q |
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| T |
52000909 |
ataactcgtccacattggtcaagttgtagcacctatt |
52000945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 536
Target Start/End: Complemental strand, 51988294 - 51988159
Alignment:
| Q |
401 |
atacctctaatgtggaagagtccaacactccaaaatatgcagtgaattcttcctgtgtcaaccaggagcagtctttaagccaaacatgagtaggagaccc |
500 |
Q |
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| T |
51988294 |
atacctctaatatggaagtgtccaatgttccaaaatattttataaattcttcctctgtcaaccagaagcaatctttaagccgaatcacatttgaaaaccc |
51988195 |
T |
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| Q |
501 |
acttagaagtacttcaagaaagcgagcattcatttt |
536 |
Q |
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| T |
51988194 |
actaagaagtagttcaagaaagtgaccattcatttt |
51988159 |
T |
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