View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18776_low_30 (Length: 315)

Name: NF18776_low_30
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18776_low_30
NF18776_low_30
[»] chr7 (1 HSPs)
chr7 (1-312)||(27117677-27117988)
[»] chr4 (3 HSPs)
chr4 (78-312)||(23010943-23011177)
chr4 (78-312)||(53371773-53372007)
chr4 (120-196)||(21604131-21604207)
[»] scaffold0316 (1 HSPs)
scaffold0316 (78-312)||(2892-3126)
[»] chr3 (1 HSPs)
chr3 (79-251)||(7266605-7266776)
[»] chr1 (3 HSPs)
chr1 (90-222)||(32239442-32239574)
chr1 (76-176)||(32240033-32240133)
chr1 (253-297)||(32239579-32239623)
[»] chr8 (1 HSPs)
chr8 (78-142)||(41763788-41763852)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 27117677 - 27117988
Alignment:
Q  1 cataaatcaataaaacaccaaactgagtagtaaaatggaagtatgttttacttgaacatatctataattaccaattcgagtccagatccgctcaatttat 100  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  27117677 cataaatctataaaacaccaaattgagtagtaaaatggaagtatgttttacttgaacatatctataattatcaattggagtccagatctgctcaatttat 27117776  T
Q  101 gcagttctccatttacctggttctcttcaccgatggatgacacatggcaactaaaaattcgatggctaggattaaacacatcaattgatgaaagccatag 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||    
T  27117777 gcagttctccatttacccggttctcttcaccgatggatgacacatggcaactaaaaatccgatagctaggattaaacacatcaattgatgaaagccagag 27117876  T
Q  201 agaatcacttccatccctgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccatatccaactattcctcttctctcct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27117877 agaatcacttccatccctgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccatatccaactattcctcttctctcca 27117976  T
Q  301 cctatgcttctc 312  Q
    ||| || |||||    
T  27117977 cctgtgattctc 27117988  T

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Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 78 - 312
Target Start/End: Original strand, 23010943 - 23011177
Alignment:
Q  78 gagtccagatccgctcaatttatgcagttctccatttacctggttctcttcaccgatggatgacacatggcaactaaaaattcgatggctaggattaaac 177  Q
    |||| |||||| |||| |||||||||| | ||||||||||||||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||    
T  23010943 gagtgcagatctgctccatttatgcagctgtccatttacctggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaac 23011042  T
Q  178 acatcaattgatgaaagccatagagaatcacttccatccctgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccata 277  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  23011043 acatcaattgatgaaagtcatagagaatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccata 23011142  T
Q  278 tccaactattcctcttctctcctcctatgcttctc 312  Q
    |||||||||| ||||||||||| ||| || |||||    
T  23011143 tccaactatttctcttctctccacctgtgattctc 23011177  T

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Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 78 - 312
Target Start/End: Complemental strand, 53372007 - 53371773
Alignment:
Q  78 gagtccagatccgctcaatttatgcagttctccatttacctggttctcttcaccgatggatgacacatggcaactaaaaattcgatggctaggattaaac 177  Q
    |||| |||||| |||| |||||||||| | |||||||||| |||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||    
T  53372007 gagtgcagatctgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaac 53371908  T
Q  178 acatcaattgatgaaagccatagagaatcacttccatccctgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccata 277  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  53371907 acatcaattgatgaaagccatagagaatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccata 53371808  T
Q  278 tccaactattcctcttctctcctcctatgcttctc 312  Q
    |||||||||| ||||||||||| ||| || |||||    
T  53371807 tccaactatttctcttctctccacctgtgattctc 53371773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 21604131 - 21604207
Alignment:
Q  120 gttctcttcaccgatggatgacacatggcaactaaaaattcgatggctaggattaaacacatcaattgatgaaagcc 196  Q
    ||||| || ||||||| ||| ||| || ||| ||||||||  ||||||||||||||| |||| ||||||||||||||    
T  21604131 gttcttttgaccgatgaatgccacgtgtcaaataaaaattgaatggctaggattaaaaacatgaattgatgaaagcc 21604207  T

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Target: scaffold0316 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 78 - 312
Target Start/End: Complemental strand, 3126 - 2892
Alignment:
Q  78 gagtccagatccgctcaatttatgcagttctccatttacctggttctcttcaccgatggatgacacatggcaactaaaaattcgatggctaggattaaac 177  Q
    |||| |||||| |||| |||||||||| | |||||||||| | |||||||||| |||||||||||| ||||||||||||||  ||||| |||||||||||    
T  3126 gagtgcagatctgctccatttatgcagctgtccatttacccgattctcttcactgatggatgacacgtggcaactaaaaatcagatggttaggattaaac 3027  T
Q  178 acatcaattgatgaaagccatagagaatcacttccatccctgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccata 277  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  3026 acatcaattgatgaaagccatagataatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccata 2927  T
Q  278 tccaactattcctcttctctcctcctatgcttctc 312  Q
    |||||||||| ||||||||||| ||| || |||||    
T  2926 tccaactatttctcttctctccacctgtgattctc 2892  T

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Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 79 - 251
Target Start/End: Original strand, 7266605 - 7266776
Alignment:
Q  79 agtccagatccgctcaatttatgcagttctccatttacctggttctcttcaccgatggatgacacatggcaactaaaaattcgatggctaggattaaaca 178  Q
    |||| ||||| |||| |||||||||  | |||||||||| ||||||||||||||||| |||| ||||||||| |||||| || ||||||||||||||| |    
T  7266605 agtctagatctgctccatttatgcatctatccatttacccggttctcttcaccgatgaatgatacatggcaattaaaaactccatggctaggattaaaaa 7266704  T
Q  179 catcaattgatgaaagccatagagaatcacttccatccctgacccccaatcatagcaactactcctcttctct 251  Q
    |||||||| ||||||||||| ||||| ||||||||||||||| ||||||||| |  |||||||||||||||||    
T  7266705 catcaatttatgaaagccatggagaagcacttccatccctga-ccccaatcacaataactactcctcttctct 7266776  T

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Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 32239442 - 32239574
Alignment:
Q  90 gctcaatttatgcagttctccatttacctggttctcttcaccgatggatgacacatggcaactaaaaattcgatggctaggattaaacacatcaattgat 189  Q
    |||| |||||||||| | |||||||||   ||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  32239442 gctccatttatgcagctgtccatttactcagttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaacacatcaattgat 32239541  T
Q  190 gaaagccatagagaatcacttccatccctgacc 222  Q
    |||||||||||||||||||||||||| ||||||    
T  32239542 gaaagccatagagaatcacttccatctctgacc 32239574  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 32240133 - 32240033
Alignment:
Q  76 tcgagtccagatccgctcaatttatgcagttctccatttacctggttctcttcaccgatggatgacacatggcaactaaaaattcgatggctaggattaa 175  Q
    |||||| |||||| |||| |||||||||| | |||||||||| |||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||    
T  32240133 tcgagtgcagatctgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaa 32240034  T
Q  176 a 176  Q
    |    
T  32240033 a 32240033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 32239579 - 32239623
Alignment:
Q  253 ttctccatcgctgaccccaaccatatccaactattcctcttctct 297  Q
    |||| ||||||| |||||||||||||||||||||| |||||||||    
T  32239579 ttcttcatcgctaaccccaaccatatccaactatttctcttctct 32239623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 41763788 - 41763852
Alignment:
Q  78 gagtccagatccgctcaatttatgcagttctccatttacctggttctcttcaccgatggatgaca 142  Q
    |||| |||||| |||| |||||||||  | |||||||| | | ||||||||||||||||||||||    
T  41763788 gagtgcagatctgctccatttatgcaactgtccatttatccgattctcttcaccgatggatgaca 41763852  T

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