View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18776_low_34 (Length: 290)
Name: NF18776_low_34
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_34 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 1231206 - 1231117
Alignment:
| Q |
18 |
ggataacaaggactaaacacttaagaaaagaatcaaaattcactatacattcaatgcttgtttaagttctcaaatcaataacaaaatcaa |
107 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1231206 |
ggataacaagaacgaaacacttaagaaaagaatcaaaattcactatacattcaatgcttgtttaagttctcaaatcaataacaaaatcaa |
1231117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 1231051 - 1230979
Alignment:
| Q |
197 |
ctaagtcctccattgacgaagatcatttatggataacagttagaatgtcaattaggcaaaaagaatgaatttt |
269 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1231051 |
ctaagtcctccattgacgaagatcgtttatggataacagttagaatgtcaattaggcaaaaagaatgaatttt |
1230979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 1231094 - 1231048
Alignment:
| Q |
110 |
cttctagattggaaaacaagaatcaaacactgaagatgtgtaactaa |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1231094 |
cttctagattggaaaacaagaatcaaacactgaagatgtgtaactaa |
1231048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 1432320 - 1432393
Alignment:
| Q |
36 |
acttaagaaaagaatcaaaattcactatacattcaatgcttgtttaagttctcaa--atcaataacaaaatcaa |
107 |
Q |
| |
|
||||||| ||||||||| ||| ||| |||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
1432320 |
acttaagcaaagaatcagaatacaccatacattcaatgcttgtttaaggtctcaactttcaataacaaaatcaa |
1432393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 1250496 - 1250435
Alignment:
| Q |
22 |
aacaaggactaaacacttaagaaaagaatcaaaattcactatacattcaatgcttgtttaag |
83 |
Q |
| |
|
|||||| ||||||| ||| | ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1250496 |
aacaagaactaaacgcttgaaaaaagaatcgaaattcactctacattcaatgcttgtttaag |
1250435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University