View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18776_low_36 (Length: 285)

Name: NF18776_low_36
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18776_low_36
NF18776_low_36
[»] chr8 (1 HSPs)
chr8 (1-285)||(9020423-9020705)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 9020423 - 9020705
Alignment:
Q  1 aatagaaaatagaaatggataataaggtaactagataactcgtgctctatgtatatagggtcgctgcacgtattggaccttgtcaacgaacatgccacga 100  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9020423 aatagaaaacagaaatggataataaggtaactagctaactcgtgctctatgtatatagggtcgctgcacgtattggaccttgtcaacgaacatgccacga 9020522  T
Q  101 agttaagagctaccaaccgaatgtgggacaccacatacccctcaacaacgaaaaacttatgcactacacacacaaattgttgatcaaggctaatcgttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9020523 agttaagagctaccaaccgaatgtgggacaccacatacccctcaacaaggaaaaacttatgcactacacaaacaaattgttgatcaaggctaatcgttgt 9020622  T
Q  201 aggttatgttatttgaccaatatgaataattttgcctatactacgatatgaataattttatctctttgtgcgtacatgatacaac 285  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  9020623 aggttatgttatttgaccaatatgaataattttgcctataccacgatatgaataattttatctc--tgtgcgtacatgatacaac 9020705  T

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