View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_38 (Length: 272)
Name: NF18776_low_38
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 11749456 - 11749202
Alignment:
| Q |
4 |
atgatagcagtgaagatgatggtgttttgcatgaaattaatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaa |
103 |
Q |
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| T |
11749456 |
atgatagtagtgaagatgatggtgttttgcgtgaaattgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaa |
11749357 |
T |
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| Q |
104 |
aaccaagaaaattgggtttgttgatgaatcccttatttgagttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaa |
203 |
Q |
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| T |
11749356 |
aaccaagaaaatggggtttgttgatgaatcccttatttgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaa |
11749257 |
T |
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| Q |
204 |
gaattgtcttttaaagcccttgctaaccatgctgatggattggtttcccttgatg |
258 |
Q |
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| T |
11749256 |
gaattgtcttttaaagcccttgctaatcatgttgatggattggtttcccttgatg |
11749202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 43 - 258
Target Start/End: Complemental strand, 52011608 - 52011393
Alignment:
| Q |
43 |
atgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaattgggtttgttgatgaatcccttatttg |
142 |
Q |
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| T |
52011608 |
atgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttatttg |
52011509 |
T |
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| Q |
143 |
agttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaaccatgctgatgga |
242 |
Q |
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| T |
52011508 |
ggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatgga |
52011409 |
T |
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| Q |
243 |
ttggtttcccttgatg |
258 |
Q |
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| T |
52011408 |
atggtttcgcttgatg |
52011393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 51987880 - 51988057
Alignment:
| Q |
33 |
catgaaattaatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaattgggtttgttgatgaat |
132 |
Q |
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| T |
51987880 |
catgaaactgatgatggttctccaacacctttctctaaagcaattaaagctattcaagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaat |
51987979 |
T |
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| Q |
133 |
cccttatttgagttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgt |
210 |
Q |
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| T |
51987980 |
ctcttatttggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgt |
51988057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 52001753 - 52001568
Alignment:
| Q |
33 |
catgaaattaatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaattgggtttgttgatgaat |
132 |
Q |
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|||||| || |||||| |||||||||||||||||| || || ||||||||||||||||||||||| | |||| ||| |||| |||||||| ||||||| |
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| T |
52001753 |
catgaagttgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgtcgatgaat |
52001654 |
T |
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| Q |
133 |
cccttatttgagttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaa |
218 |
Q |
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| T |
52001653 |
cccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaa |
52001568 |
T |
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