View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_41 (Length: 259)
Name: NF18776_low_41
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 54859950 - 54859710
Alignment:
| Q |
18 |
aagaaatcactaagaatagaagagtagcccaagttaattggaagaatttacactaggaaaaattatgctcatatggttaatgccgacttaaaatatataa |
117 |
Q |
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| T |
54859950 |
aagaaatcactaagaatagaagagtagcccaagttaattggaagaatttacactaggaaaaattatgctcatatggttaatgccgacttaaa----ataa |
54859855 |
T |
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| Q |
118 |
ttgttttcttttcatagaaccagacagacgtacgagagtccagaaaaccaaacatata---cnnnnnnncagagtacaagataaatataaagtacaggta |
214 |
Q |
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| T |
54859854 |
ttgttttcttttcatagaaccagacagacgtacgagagtccagaaaaccaaaaatacaaagcaaaaaaacagagtacaagataaatataaagtacaggta |
54859755 |
T |
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| Q |
215 |
atgttaaaattaccaatcagtgcagtgatcacactggaccataac |
259 |
Q |
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| T |
54859754 |
atgttaaaattaccaatcagtgcagtgatcacactggaccataac |
54859710 |
T |
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