View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_46 (Length: 237)
Name: NF18776_low_46
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 54844183 - 54844066
Alignment:
| Q |
49 |
gttttcatacaatttttcaaagacatgattgtatttttgaaatgaaaccaaacagtcttacattttcacactcccaattttcacttgctcagacaagcag |
148 |
Q |
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| T |
54844183 |
gttttcatacaatttttcaaagacatgattgtatttttgaaatgaaaccaaacagtcttacattttcacactcccaattttcacttgctcagacaagcag |
54844084 |
T |
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| Q |
149 |
aacctttatttatgcaat |
166 |
Q |
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| T |
54844083 |
aacctttatttatgcaat |
54844066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 54844053 - 54844015
Alignment:
| Q |
184 |
aagctctattgctaaggctgtccctctcttagtcataaa |
222 |
Q |
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| T |
54844053 |
aagctctattgctaaggctgtccctctcttagtcataaa |
54844015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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