View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18776_low_6 (Length: 563)
Name: NF18776_low_6
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18776_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 27328716 - 27329260
Alignment:
| Q |
1 |
aacatgaatttggtggtttgatattgagggaccacctgctaaaacgcaggtgacataaaagcttgatccgatccaacatacttacatgcaaaattaggtc |
100 |
Q |
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| T |
27328716 |
aacatgaatttggtggtttgatattgagggaccacctgctaaaacgcaggtgacataaaagcttgatccgatccaacatacttacatgcaaaattaggtc |
27328815 |
T |
|
| Q |
101 |
gtaaacaaataaatctcctggcctgtgtgacgtttcatcagctgtcacctgttctactatgacaccatcacattatttgcatgccactaaaatagcacca |
200 |
Q |
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| T |
27328816 |
gtaaacaaataaatctcctggcctgtgtgacgtttcatcagctgtcacctgttctactatgacaccatcacattatttgcatgccactaaaatagcaccg |
27328915 |
T |
|
| Q |
201 |
caaattcatttggagtttgttgctctaagaaaaaataaatgtattaaattaaagttagctcttgagcatattagtttgannnnnnnnaagaattgggaac |
300 |
Q |
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| T |
27328916 |
caaattcatttggagttggttgctctaagaaaaaataaatgtattatattaaagttagctcttgagcatattagtttgatttttttaaagaattgggaac |
27329015 |
T |
|
| Q |
301 |
tagtagtgttcattttaaggtacaccatgaaaccnnnnnnnnnattctttaaaagtgctctaacttcatgtttgtaagacctttattaaccaggaacacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27329016 |
tagtagtgttcattttaaggtacaccatgaaacctttttttttattctttaaaagtgctctaacttcatgtttgcaagacctttattaaccaggaacacc |
27329115 |
T |
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| Q |
401 |
agaatagattaaccaaaagaatggcccataattgcgtgcaaattttatctcatcccattattatatattttttggttgcatctctatctcctaaatatca |
500 |
Q |
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| T |
27329116 |
agaatagattaaccaaaagaatggcccataattgcgtgcaaattttatctcatcccattattatatattttttggttgcatctctatctcctaaatatca |
27329215 |
T |
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| Q |
501 |
aaaaatcgcagagaaatgtgccaacattaattgttttcatgatca |
545 |
Q |
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| T |
27329216 |
aaaaatcgcagagaaatgtgccaacattaattgttttcatgatca |
27329260 |
T |
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