View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18776_low_7 (Length: 561)

Name: NF18776_low_7
Description: NF18776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18776_low_7
NF18776_low_7
[»] chr3 (2 HSPs)
chr3 (3-546)||(12839817-12840370)
chr3 (4-145)||(17636117-17636258)
[»] chr7 (6 HSPs)
chr7 (8-177)||(318396-318565)
chr7 (10-145)||(1467738-1467873)
chr7 (392-463)||(17887800-17887871)
chr7 (107-176)||(4810718-4810787)
chr7 (424-464)||(12612694-12612734)
chr7 (407-463)||(21546456-21546512)
[»] chr4 (7 HSPs)
chr4 (32-177)||(21556869-21557014)
chr4 (99-175)||(10584088-10584163)
chr4 (419-464)||(18631908-18631953)
chr4 (488-546)||(18632004-18632062)
chr4 (391-464)||(12215547-12215620)
chr4 (391-464)||(12881368-12881441)
chr4 (102-142)||(8717708-8717748)
[»] chr1 (5 HSPs)
chr1 (33-177)||(13318303-13318447)
chr1 (23-141)||(24466218-24466336)
chr1 (59-175)||(13306871-13306987)
chr1 (391-463)||(36977773-36977845)
chr1 (509-546)||(25426214-25426251)
[»] chr2 (3 HSPs)
chr2 (23-177)||(11536171-11536325)
chr2 (34-177)||(32067097-32067239)
chr2 (117-177)||(14291223-14291283)
[»] chr5 (4 HSPs)
chr5 (101-177)||(22181871-22181947)
chr5 (89-177)||(39419881-39419969)
chr5 (99-182)||(42410297-42410379)
chr5 (489-546)||(15609099-15609156)
[»] chr6 (3 HSPs)
chr6 (489-548)||(24968882-24968941)
chr6 (117-179)||(24967515-24967577)
chr6 (419-459)||(24653958-24653998)
[»] scaffold0227 (1 HSPs)
scaffold0227 (338-374)||(1466-1502)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 3 - 546
Target Start/End: Complemental strand, 12840370 - 12839817
Alignment:
Q  3 caatcgactatttttccaatgagcattggaagtcagttgtttctatattatttctcgtcgttaagcttagtttggaaacatacactgaggaaaggatgga 102  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12840370 caatcggctatttttccattgagtattggaagttagttgtttctatgtcatttctcgtcgttaagcttagtttggaaacgtacactgaggaaaggatgga 12840271  T
Q  103 gttatatttgagacataaaaagtatacaattgattaagaggaagcatttgagggatagttattgaaattcaatccaatcaatgctttggttaggcagtcc 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  12840270 gttatatttgaggcataaaaagtatacaattgattaagaggaagcatttgaggaatagttattgaaattcaatccaaacaacgctttggttaggcagtcc 12840171  T
Q  203 ccaagtttgtactttccttgttggtacaccttcccttaatattccagtgaagattgagaccttttactaataaaaattgaacataaaatcgttaagaaaa 302  Q
    ||| |||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12840170 ccatgtttgtacttgctttgtgggtacaccttcccttaatatttcagtgaagattgagaccttttactaataaaaattgaacataaaatcgttaagaaaa 12840071  T
Q  303 gtttatacaaatcaaaccataaggttaaagactgattacattatttttagcatatttttcattcattatagtagttatt-ttcaaagataagaggagttt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||| ||||||||||    
T  12840070 gtttatacaaatcaaaccataaggttaaagactgattacattatttttagcatattttt-attcattatagtagttattctcctaagatgagaggagttt 12839972  T
Q  402 tagacaagtttcttattgtttgagggacattttgtaatattttgatattgagtcatgtaattaaaccaatcaattcttaggtgttt----------tatt 491  Q
    |||||||||||||||||||| |||||| ||||| | || ||||||||||||||||||||||||||| |||||||||||||||||||          ||||    
T  12839971 tagacaagtttcttattgttcgagggaaatttttttatgttttgatattgagtcatgtaattaaactaatcaattcttaggtgtttataagtattctatt 12839872  T
Q  492 gaaaaatcacataatatggcaaagcaagaaacctgatgaagaattgggaagacat 546  Q
    |||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||    
T  12839871 gaaaaatcacatcatatggcaaagcaagacacctcatgaaaaattgggaagacat 12839817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 17636117 - 17636258
Alignment:
Q  4 aatcgactatttttccaatgagcattggaagtcagttgtttctatattatttctcgtcgttaagcttagtttggaaacatacactgaggaaaggatggag 103  Q
    ||||||||||||| ||   |||||| ||| ||||||||||||||| ||||||| |||| ||||  ||||| |||  |  ||  | ||||||||| |||||    
T  17636117 aatcgactattttgccgtcgagcatcggatgtcagttgtttctatgttatttcccgtcattaactttagtctggtgatgtaagcggaggaaagggtggag 17636216  T
Q  104 ttatatttgagacataaaaagtatacaattgattaagaggaa 145  Q
    ||||||  ||| |||||||||||||| || ||||||||||||    
T  17636217 ttatatcagagtcataaaaagtataccatcgattaagaggaa 17636258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 318565 - 318396
Alignment:
Q  8 gactatttttccaatgagcattggaagtcagttgtttctatattatttctcgtcgttaagcttagtttggaaacatacactgaggaaaggatggagttat 107  Q
    |||||||||||||  ||||||||||||| ||||||||||||  |||||| ||||||||| ||| ||||||| || ||||| |||| |||| |||||||||    
T  318565 gactatttttccatcgagcattggaagttagttgtttctatgctatttcgcgtcgttaaccttggtttggagacgtacaccgaggtaagggtggagttat 318466  T
Q  108 atttgagacataaaaagtatacaattgattaagaggaagcatttgagggatagttattgaaattcaatcc 177  Q
    |  ||||||||||||||||||||||  ||||| ||||| |||  ||||||||||| ||||||||||||||    
T  318465 agatgagacataaaaagtatacaatcaattaataggaaccatacgagggatagtttttgaaattcaatcc 318396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 1467738 - 1467873
Alignment:
Q  10 ctatttttccaatgagcattggaagtcagttgtttctatattatttctcgtcgttaagcttagtttggaaacatacactgaggaaaggatggagttatat 109  Q
    ||||||||| |  ||||||  |||| || |||||| ||| |||||||  ||||||||  |||||||||| || |||  |||||||| | |||||||||||    
T  1467738 ctatttttctaccgagcatcagaagccatttgtttatatgttatttcatgtcgttaacattagtttggagacgtacgttgaggaaatggtggagttatat 1467837  T
Q  110 ttgagacataaaaagtatacaattgattaagaggaa 145  Q
    ||||| ||||||||||||||||| ||||||||||||    
T  1467838 ttgaggcataaaaagtatacaatcgattaagaggaa 1467873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 463
Target Start/End: Original strand, 17887800 - 17887871
Alignment:
Q  392 agaggagttttagacaagtttcttattgtttgagggacattttgtaatattttgatattgagtcatgtaatt 463  Q
    |||||||||||||| || || | ||| |||| |||||||||||||||| |||| || |||||||||||||||    
T  17887800 agaggagttttagagaaattgcctatggttttagggacattttgtaatgttttcattttgagtcatgtaatt 17887871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 4810718 - 4810787
Alignment:
Q  107 tatttgagacataaaaagtatacaattgattaagaggaagcatttgagggatagttattgaaattcaatc 176  Q
    |||||||| ||||| | |||||||||  ||||||||||| | | ||||| |||||||||||||| |||||    
T  4810718 tatttgaggcataagatgtatacaatcaattaagaggaaacctatgaggaatagttattgaaatgcaatc 4810787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 12612734 - 12612694
Alignment:
Q  424 agggacattttgtaatattttgatattgagtcatgtaatta 464  Q
    ||||| ||||||||||||||| ||| |||||||||||||||    
T  12612734 agggatattttgtaatattttcatactgagtcatgtaatta 12612694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 21546512 - 21546456
Alignment:
Q  407 aagtttcttattgtttgagggacattttgtaatattttgatattgagtcatgtaatt 463  Q
    |||||||| || |||| |||||||||||||||| |||| ||||  ||||||||||||    
T  21546512 aagtttctcatggtttaagggacattttgtaatgttttcatatcaagtcatgtaatt 21546456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 21557014 - 21556869
Alignment:
Q  32 aagtcagttgtttctatattatttctcgtcgttaagcttagtttggaaacatacactgaggaaaggatggagttatatttgagacataaaaagtatacaa 131  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| |  |||| | | |||| | | ||||||| | |||| |||||||| |||||||    
T  21557014 aagtcagttgtttctatattatttcacgtcgttaaccttagtttggagatgtacaataaagaaaaggtagagttatgtatgaggcataaaaaatatacaa 21556915  T
Q  132 ttgattaagaggaagcatttgagggatagttattgaaattcaatcc 177  Q
    | ||||||||| || ||| ||||  ||| |||||||||||||||||    
T  21556914 tcgattaagagtaaccatatgagaaatatttattgaaattcaatcc 21556869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 10584088 - 10584163
Alignment:
Q  99 tggagttatatttgagacataaaaagtatacaattgattaagaggaagcatttgagggatagttattgaaattcaat 175  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||  ||||||| | |||||||||    
T  10584088 tggagttatatctgagacataaaaa-tatacaattgattaagaggaaacatatgagtaatagttactaaaattcaat 10584163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 18631908 - 18631953
Alignment:
Q  419 gtttgagggacattttgtaatattttgatattgagtcatgtaatta 464  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||    
T  18631908 gtttaagggacattttgtaatattttcatattgagtcatgtaatta 18631953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 546
Target Start/End: Original strand, 18632004 - 18632062
Alignment:
Q  488 tattgaaaaatcacataatatggcaaagcaagaaacctgatgaagaattgggaagacat 546  Q
    |||||||||||||  |||| ||||||||||||| || | |||||||||||| |||||||    
T  18632004 tattgaaaaatcatgtaatttggcaaagcaagacactttatgaagaattggaaagacat 18632062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 464
Target Start/End: Original strand, 12215547 - 12215620
Alignment:
Q  391 aagaggagttttagacaagtttcttattgtttgagggacattttgtaatattttgatattgagtcatgtaatta 464  Q
    ||||||||||||||| || || || ||| ||| ||||| |||||||| | |||| |||| ||||||||||||||    
T  12215547 aagaggagttttagagaatttgctcattatttaagggaaattttgtattgttttcatatcgagtcatgtaatta 12215620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 464
Target Start/End: Complemental strand, 12881441 - 12881368
Alignment:
Q  391 aagaggagttttagacaagtttcttattgtttgagggacattttgtaatattttgatattgagtcatgtaatta 464  Q
    |||| |||||||||| ||||| || || |||| ||||||||||| |||| |||| | || ||||||||||||||    
T  12881441 aagaagagttttagagaagttactcatggtttaagggacattttataatgtttttaaatcgagtcatgtaatta 12881368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 8717748 - 8717708
Alignment:
Q  102 agttatatttgagacataaaaagtatacaattgattaagag 142  Q
    ||||||||||||  ||||||||||||||||| |||||||||    
T  8717748 agttatatttgaagcataaaaagtatacaatcgattaagag 8717708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 13318447 - 13318303
Alignment:
Q  33 agtcagttgtttctatattatttctcgtcgttaagcttagtttggaaacatacactgaggaaaggatggagttatatttgagacataaaaagtatacaat 132  Q
    |||||||||| || || ||||||  || |||||| ||| ||||||| || ||| ||||| ||| | ||||||||||| |||||||| |||||||||||||    
T  13318447 agtcagttgtctccatgttattttgcgacgttaaactttgtttggagacctacgctgagaaaatggtggagttatatatgagacattaaaagtatacaat 13318348  T
Q  133 tgattaagaggaagcatttgagggatagttattgaaattcaatcc 177  Q
    |||||||||| || ||| | ||  |||||||||||||||||||||    
T  13318347 tgattaagagaaatcatataagtaatagttattgaaattcaatcc 13318303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 24466218 - 24466336
Alignment:
Q  23 gagcattggaagtcagttgtttctatattatttctcgtcgttaagcttagtttggaaacatacactgaggaaaggatggagttatatttgagacataaaa 122  Q
    |||||||||||||||||||||||||| | ||||| |||| |||| |||| ||| ||||| ||| || |||||||| || |||||||| ||| ||||||||    
T  24466218 gagcattggaagtcagttgtttctatgtcatttcacgtccttaaccttaattttgaaacctacgctaaggaaagggtgaagttatatctgaaacataaaa 24466317  T
Q  123 agtatacaattgattaaga 141  Q
     |||| |||| ||||||||    
T  24466318 tgtattcaatcgattaaga 24466336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 13306871 - 13306987
Alignment:
Q  59 gtcgttaagcttagtttggaaacatacactgaggaaaggatggagttatatttgagacataaaaagtatacaattgattaagaggaagcatttgagggat 158  Q
    |||||||| ||| ||||||| || ||| || |||||||| ||||||||||| |||| | | ||||||||| ||| ||||||||| || |||   ||  ||    
T  13306871 gtcgttaaactttgtttggagacgtacgcttaggaaagggtggagttatatatgaggccttaaaagtatataatcgattaagagaaaccatacaagaaat 13306970  T
Q  159 agttattgaaattcaat 175  Q
    |||||||||||||||||    
T  13306971 agttattgaaattcaat 13306987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 36977845 - 36977773
Alignment:
Q  391 aagaggagttttagacaagtttcttattgtttgagggacattttgtaatattttgatattgagtcatgtaatt 463  Q
    |||| ||||||||| ||||||  | || |||| ||| ||||||||||||||||| |||| |||||||||||||    
T  36977845 aagatgagttttaggcaagttgatcatggtttaaggaacattttgtaatattttcatatcgagtcatgtaatt 36977773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 25426251 - 25426214
Alignment:
Q  509 ggcaaagcaagaaacctgatgaagaattgggaagacat 546  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  25426251 ggcaaagcaagacacctcatgaagaattgggaagacat 25426214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 11536325 - 11536171
Alignment:
Q  23 gagcattggaagtcagttgtttctatattatttctcgtcgttaagcttagtttggaaacatacactgaggaaaggatggagttatatttgagacataaaa 122  Q
    |||||| | ||||| ||||| ||| | |||||||  |||||||| ||||||||||| || | ||||||||||| | ||||||  ||| |||| ||| |||    
T  11536325 gagcatcgaaagtccgttgtctctctgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggtggagtagtatatgaggcatgaaa 11536226  T
Q  123 agtatacaattgattaagaggaagcatttgagggatagttattgaaattcaatcc 177  Q
    |||||||||||||||||||||||  |  |||||  |||||||||||||| |||||    
T  11536225 agtatacaattgattaagaggaattacatgaggagtagttattgaaatttaatcc 11536171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 32067239 - 32067097
Alignment:
Q  34 gtcagttgtttctatattatttctcgtcgttaagcttagtttggaaacatacactgaggaaaggatggagttatatttgagacataaaaagtatacaatt 133  Q
    ||||||||||||||| ||||||| ||||||||| || ||   ||| |||||| |||| |||| | ||||||||||| |  |||||||||||||||||||     
T  32067239 gtcagttgtttctatgttatttcacgtcgttaacctgagcc-ggagacatacgctgatgaaaaggtggagttatatctaggacataaaaagtatacaatc 32067141  T
Q  134 gattaagaggaagcatttgagggatagttattgaaattcaatcc 177  Q
     ||||||| ||| ||| ||||  || ||||||||||||||||||    
T  32067140 aattaagatgaaacatatgagtaatcgttattgaaattcaatcc 32067097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 14291283 - 14291223
Alignment:
Q  117 ataaaaagtatacaattgattaagaggaagcatttgagggatagttattgaaattcaatcc 177  Q
    |||||||||||||||| |||||| ||||| |||  |||| ||||||| |||||||||||||    
T  14291283 ataaaaagtatacaatcgattaaaaggaaacatacgaggaatagttactgaaattcaatcc 14291223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 22181947 - 22181871
Alignment:
Q  101 gagttatatttgagacataaaaagtatacaattgattaagaggaagcatttgagggatagttattgaaattcaatcc 177  Q
    ||||||||| |||  |||||||||||||||||  ||||||||||| |||   | | |||||||||||||||||||||    
T  22181947 gagttatatatgaagcataaaaagtatacaatcaattaagaggaaccatacaatgaatagttattgaaattcaatcc 22181871  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 39419969 - 39419881
Alignment:
Q  89 gaggaaaggatggagttatatttgagacataaaaagtatacaattgattaagaggaagcatttgagggatagttattgaaattcaatcc 177  Q
    |||| |||| || ||||||||||||  ||||||||||||||||| |||||| | ||| |||  |||  ||| |||||||||||||||||    
T  39419969 gagggaagggtgaagttatatttgaagcataaaaagtatacaatcgattaatatgaaacataagagaaataattattgaaattcaatcc 39419881  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 42410297 - 42410379
Alignment:
Q  99 tggagttatatttgagacataaaaagtatacaattgattaagaggaagcatttgagggatagttattgaaattcaatccaatca 182  Q
    ||||||||||| ||||| ||| ||||| |||||| |||||||||||| ||| ||||| |||  || ||||||||||||| ||||    
T  42410297 tggagttatatatgagatatagaaagtttacaatcgattaagaggaaacatatgaggaata-ataatgaaattcaatcccatca 42410379  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 15609099 - 15609156
Alignment:
Q  489 attgaaaaatcacataatatggcaaagcaagaaacctgatgaagaattgggaagacat 546  Q
    ||||||||||||  |||| ||  ||||||||| |||| ||||||||||||||||||||    
T  15609099 attgaaaaatcatgtaatttgagaaagcaagacaccttatgaagaattgggaagacat 15609156  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 548
Target Start/End: Original strand, 24968882 - 24968941
Alignment:
Q  489 attgaaaaatcacataatatggcaaagcaagaaacctgatgaagaattgggaagacattg 548  Q
    ||||||||||||  ||||   ||||||||||| |||| ||||||||||||||||||||||    
T  24968882 attgaaaaatcatgtaattcagcaaagcaagacacctcatgaagaattgggaagacattg 24968941  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 24967577 - 24967515
Alignment:
Q  117 ataaaaagtatacaattgattaagaggaagcatttgagggatagttattgaaattcaatccaa 179  Q
    ||||||| |||| |||||||||| ||||| |||   ||| |||||||||||||||||||||||    
T  24967577 ataaaaaatataaaattgattaaaaggaaacataataggaatagttattgaaattcaatccaa 24967515  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 24653958 - 24653998
Alignment:
Q  419 gtttgagggacattttgtaatattttgatattgagtcatgt 459  Q
    |||| ||| ||||||||||||||||| ||||||||||||||    
T  24653958 gtttaaggcacattttgtaatatttttatattgagtcatgt 24653998  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 1466 - 1502
Alignment:
Q  338 ttacattatttttagcatatttttcattcattatagt 374  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  1466 ttacattatttttagcatatttttcaatcattttagt 1502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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