View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18777_high_2 (Length: 349)
Name: NF18777_high_2
Description: NF18777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18777_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 24781262 - 24781597
Alignment:
| Q |
1 |
tggcaaacattacttctttttgcaagcttcaagtggctttccacaaaggcaatcattgacctcaaacgaagatgcatcaagatgatccaaaactttagga |
100 |
Q |
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| T |
24781262 |
tggcaaacattacttctttttgcaagcttcaagtggctttccacaaagacaatcattgacctcaaacgaagatgcatcaagatgatccaaaactttagga |
24781361 |
T |
|
| Q |
101 |
attggaccacacaaatgattatggctcaaatccatgtaaccaatgtaagcagcagaagatatagatttaggtataggacccttgagattattataggaaa |
200 |
Q |
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| T |
24781362 |
attggaccacacaaatgattatggctcaaatccatgtaaccaatgtaagcagcagaagatatagatttaggtataggacccttgagattattataggaaa |
24781461 |
T |
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| Q |
201 |
tatccaatgaagtaaaataagacctacccccaaatgcatcaggtatattaccctccaacaaattatgacttaagttcaaatcacttattcctgaaccaaa |
300 |
Q |
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| T |
24781462 |
tatccaatgatgtaaaataagacctacccccaaatgcatcaggtatattaccctccaacaaattatgacttaagttcaaatcacttattcctgaaccaaa |
24781561 |
T |
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| Q |
301 |
aagagactttgggatcatccctgaaagcttgtttgt |
336 |
Q |
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| T |
24781562 |
aagagactttgggatcatccccgaaagcttgtttgt |
24781597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 41997963 - 41998052
Alignment:
| Q |
106 |
accacacaaatgattatggctcaaatccatgtaaccaatgtaagcagcagaagatatagatttaggtataggacccttgagattattata |
195 |
Q |
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||||||||||||||||| |||||||||| | ||||| |||| ||||||| || |||||||||||||||||||| |||| |||||| |
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| T |
41997963 |
accacacaaatgattataactcaaatccaaatgtccaatataagaagcagaacccattgatttaggtataggacccttaagatgattata |
41998052 |
T |
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