View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18777_low_1 (Length: 403)
Name: NF18777_low_1
Description: NF18777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18777_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 39 - 388
Target Start/End: Complemental strand, 31997638 - 31997282
Alignment:
| Q |
39 |
gagcatccaatgttcttcttcaaacatgttttctcaatgttgtgagaattggtggatcacttcgtta-------ctaaacacgaaaaagaatgtcccaaa |
131 |
Q |
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| T |
31997638 |
gagcatccaatgtccttcttcaaacatgttttctcaatgttgtgagaattggtggatcacttcgttattcaatactaaacacgaaaaagaatgtcccaaa |
31997539 |
T |
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| Q |
132 |
caaacaactataagtctagtcatccttcttaccgactataaagtggtttttaaaactcaactttgtttttggatcttcctctcatgcacagacatttcta |
231 |
Q |
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| T |
31997538 |
caaacaactataagtctagtcatccttcttaccgactacaaagtggttttcaaaacccaactttgtttttggatcttcctctcatgcacggacatttcta |
31997439 |
T |
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| Q |
232 |
aaacaaaatgatatccaaatgttgttttctaacgaggatgcttaggttacgaacttattgcatattactcaaatctcaacggtgctaacacattgataaa |
331 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
31997438 |
aaacaaaatgatatccaactgttgttttctaacgaggatgcttaggttacgaacttattgcatattactcaaatctcaacaatgctaacgcattgataaa |
31997339 |
T |
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| Q |
332 |
gattcaccatctatcattctatctatttgatattaaagctataacatgctttctttt |
388 |
Q |
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| T |
31997338 |
gattcaccatctatcattctatctatttgatattaaagctataacatgctttctttt |
31997282 |
T |
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