View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18777_low_3 (Length: 218)
Name: NF18777_low_3
Description: NF18777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18777_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 51762974 - 51763161
Alignment:
| Q |
8 |
tccaagaatatgaaaagctggcactattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataat |
107 |
Q |
| |
|
||||| |||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51762974 |
tccaaaaataagaaaagctgtcactattagaaaaaaatgcacaaacaatccctcaacaccc------taattatgccatttccaggttggtaatcataat |
51763067 |
T |
|
| Q |
108 |
gagggtgagaaagctcttgatacaactcattctccaaagcaagagaaacaataacccaccaaaaaccatgatcactaaataacaaccaattaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51763068 |
gagggtgagaaagctcttgatacaactcattctccaaaccaagagaaacaataacccaccaaaaaccatgatcactaaataacaaccaattaac |
51763161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 51854916 - 51854766
Alignment:
| Q |
49 |
caaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaagca |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| |||||| ||| |||||| |||||||||||| ||||||||||||| ||||||||||| || |
|
|
| T |
51854916 |
caaacaatccctcaacacccccaaggtaat---gcgatttgcaggttcgtagtcataaagagggtgagaaaactcttgatacaacccattctccaaatca |
51854820 |
T |
|
| Q |
149 |
agagaaacaataacccac-caaaaaccatgatcactaaataacaaccaattaac |
201 |
Q |
| |
|
||||||||||| |||| | ||||||| | ||||| | ||| |||||||||||| |
|
|
| T |
51854819 |
agagaaacaatgaccctctcaaaaactaggatcatcatataccaaccaattaac |
51854766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 51858571 - 51858426
Alignment:
| Q |
53 |
caatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaagcaagag |
152 |
Q |
| |
|
|||||||||| ||||||||||| ||| || | ||||||||| ||||| |||| |||||||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
51858571 |
caatccctcagcacccccaaggcaat---gcaagttccaggtttgtaattataaagagggtgaaaaagctcttgacacaactcattctccaaatcaagag |
51858475 |
T |
|
| Q |
153 |
aaacaataacccaccaaaaaccatgatcactaaataacaaccaattaac |
201 |
Q |
| |
|
||||||| |||| | ||||| | ||||| | ||| |||||||||||| |
|
|
| T |
51858474 |
aaacaatgaccctcgcaaaactacgatcatgatataccaaccaattaac |
51858426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 51756832 - 51756933
Alignment:
| Q |
49 |
caaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaagca |
148 |
Q |
| |
|
||||||||||||||||||||||||| |||| | |||| | |||||| |||| || ||||||| ||||||||||| ||||||| ||||||||| || |
|
|
| T |
51756832 |
caaacaatccctcaacacccccaagataat---gtaattttcttgttggttatcacaaagagggtgcaaaagctcttgagacaactccttctccaaatca |
51756928 |
T |
|
| Q |
149 |
agaga |
153 |
Q |
| |
|
||||| |
|
|
| T |
51756929 |
agaga |
51756933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 4183083 - 4183190
Alignment:
| Q |
49 |
caaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaagca |
148 |
Q |
| |
|
||||||||||||||||| |||||||||| | | || || ||| |||| ||||||| |||||||||||||||||||||| |||| |||| |||| | |
|
|
| T |
4183083 |
caaacaatccctcaacatccccaaggtatt---gtcagtttcagattggatatcataaagagggtgagaaagctcttgataagactccttctgcaaatga |
4183179 |
T |
|
| Q |
149 |
agagaaacaat |
159 |
Q |
| |
|
||||||||||| |
|
|
| T |
4183180 |
agagaaacaat |
4183190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University