View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_high_3 (Length: 537)
Name: NF18778_high_3
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 40310750 - 40311256
Alignment:
| Q |
1 |
atataggtctgtcctctgagcttatgtgacagaccaacttttgctactgactgagtccaacactgatacctgcttctgcttttgagtgagtatcatcatc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310750 |
atataggtctgtcctctgagtttatgtgacagaccaacttttgctactg----agtccaacactgatacctgcttctgcttttgagtgagtatcatcatc |
40310845 |
T |
|
| Q |
101 |
accaacaccagcaacagaaaccagtgttttcctttccttctatcattttcaagagtcctctcatatcttgataactcatatggcagctttttcataccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310846 |
accaacaccagcaacagaaaccagtgttttcctttccttctatcattttcaagagtcctctcatatcttgataactcatatggcagctttttcataccaa |
40310945 |
T |
|
| Q |
201 |
taccaacaaccctttcttgttgactctacatacttcaccaatataaacacttctcttcctccttctcatctttttcataatcatcaagaactctctctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310946 |
taccaacaaccctttcttgttgactctacatacttcaccaatataaacacttctcttcctccttctcatctttttcataatcatcaagaactctctctca |
40311045 |
T |
|
| Q |
301 |
gtaatcaagaaactagttgtgttgatcaaaactctaagaatagcataagcaacaaccagagtcctgaatcatccatggtagtggacaatcttgaaaaggg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40311046 |
gtaatcaagaaactagttgtgttgatcaaaactctaagaatagcataagtaacaaccagagtcctgaatcatccatggtagtggacaatcttgaaaaggg |
40311145 |
T |
|
| Q |
401 |
tgaacaagttactcagaaagctgttacttctatggagaagaaaagaagaatcagaaataagacttctttgactaaccccttctctaaggtaaatttgatg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40311146 |
tgaacaagttactcagaaagctgttacttctatggagaagaaaagaagaatcagaaataagacttctttga------------ctaaggtaaatttgatg |
40311233 |
T |
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| Q |
501 |
cagttttctttaccccctttttt |
523 |
Q |
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||||||||||||||||||||||| |
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| T |
40311234 |
cagttttctttaccccctttttt |
40311256 |
T |
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