View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18778_high_6 (Length: 309)
Name: NF18778_high_6
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 40623276 - 40623553
Alignment:
| Q |
16 |
ataaaaaccttgctcaattaattttctccttcttttcattttcatgaaattgagaagcatcttgtgttatggagtggagtaatttgaaagcaccttcatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40623276 |
ataaaaaccttgctcaattaattttctccttcttttcattttcatgaaattgagaagcatcttgtgttatggagtggagtaatttgaaagcaccttcatg |
40623375 |
T |
|
| Q |
116 |
ggatttaactgaaatggatcaaggaaccttaaacaacatagaaacaatggatggttcaattaggaggtttggagattacagaacaaaaggagatttttct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40623376 |
ggatttaactgaaatggatcaaggaaccttaaacaacatagaaacaatggatggttcaattaggaggtttggagattacagaacaaaaggagatttttct |
40623475 |
T |
|
| Q |
216 |
gttgatttgaagcttggccatgttggaaattctagcactgaatcagggctaacaaagtccaaagatgttggtggattt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40623476 |
gttgatttgaagcttggccatgttggaaattctagcactgaatcagggctaacaaagtccaaagatgttggtggattt |
40623553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 27511834 - 27511917
Alignment:
| Q |
210 |
ttttctgttgatttgaagcttggccatgttggaaattctagcactgaatcagggctaacaaagtccaaagatgttggtggattt |
293 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27511834 |
ttttttgttgatttgaagcttggccatgttggaaattctagcgctgaatcagggcttacaaagtccaaagatgttggtggattt |
27511917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 27270525 - 27270440
Alignment:
| Q |
208 |
atttttctgttgatttgaagcttggccatgttggaaattctagcactgaatcagggctaacaaagtccaaagatgttggtggattt |
293 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27270525 |
atttttttgctgatttgaagcttggccatgttggaaattctagcactaaatcagggcttacaaagtccaaagatgttggtggattt |
27270440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University